| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1852 |
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| Symbol | |
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| ID | 6409511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1989409 |
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| End bp | 1990623 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642711740 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001990853 |
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| Protein GI | 192290248 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0317173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAGCA TGCCGACGCT CTGGATCGTC TTCCTGATCA ATTTCGTTTC GCTGGGCCTG
GTGTGGGTCC ACGTCACCCG CAACTATCCA AACTTCACGC CAGCCCGCTA CATGACGGCG
GCTTGCTTCG TGCTCGCGAC CGGCTCCGTC GTCGGCATGC TTCGCATAGT GATCAATGTC
GAACTCTCGC TGATCGGCGG CGGAACGTTA GTGGTCTTCG CCTGCTGTTT GTCAGCCATG
GGCATGTACG AGTTCTACGG CCGCCGCGTG CCGTGGATGA CCTCGTTCAT CGTCACCGGC
ACGGCCGCAC TCGGGCTCAC CTTCTTCATC TTCGTCGTCG ACTCGATGGC GATGCGGATC
TTGGTGTATT CGCTGGCGCA GTTGGTCCCG ATCGCCCTGA CGCTGCCGCT GGTGACGTCC
AAGGTCGGGC GTCGCAACCC CGGCGCGCGA ATGGCAGCCG TGATCGCCTG TCTGATCATG
GCTGTCTATC TGGTGCGCTC CGTCGCTGCG ATCATGGGCG TCGGCGGCGA ACTCTCACTG
GTTCACTTCA ATGACTTCCA GTCGGCGTTG GTGCTGGCGC TGGTGTTCCT GTCGATGACC
TGGAATTTCG CCTTCCTGCT GATGGCGATC GACCGGCTGC GCTCGGAAGT TGAAAATCTC
GCGCTGCTCG ACGACCTCAC CGGCATCTCC AACCGCCGGC ATCTGCTGCA GCGGATGTCG
GAGCAGTGCA CGCTCTCGAT GAGCACCGGC GAGCCGTTCG CCGTGCTGGC GATCGACCTC
GACGGCTTCA AGGCGATCAA CGACGGTCAC GGCCATGCAG CAGGCGACGA GTGCCTGCGT
CGGTTCTCGC GGGCCGCGCA GTCGCGGCTG CGCCCCGGCG ATCTGCTGGC CCGGGCCGGC
GGCGACGAAT TCTGCGTGGT GATGCCGGGG ACGACGCTGC GCGAAGGCGC GATGATCGCC
CGCTACATCC TGGACGAGAG CCGCGCCGTG TCGGAGCGCG GCGAGGCTGG GATCAAGATC
GCAGCCTCGA TCGGCATCGC GCAGTGGACC CCGCAGATCG GCCAGCACCC CGAGCGGCTA
ATCGCGGCGG CCGATGTCGC GCTGTACAAC GCCAAGAAGC TCGGCAAGGA CCGCTACGCG
GTGTACGAGC CCGCCCCCGA GCCGCCGCCC GAGACCCATC TCCCCACACC TGAGACGCTG
CGCAAGATCG CCTGA
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| Protein sequence | MLSMPTLWIV FLINFVSLGL VWVHVTRNYP NFTPARYMTA ACFVLATGSV VGMLRIVINV
ELSLIGGGTL VVFACCLSAM GMYEFYGRRV PWMTSFIVTG TAALGLTFFI FVVDSMAMRI
LVYSLAQLVP IALTLPLVTS KVGRRNPGAR MAAVIACLIM AVYLVRSVAA IMGVGGELSL
VHFNDFQSAL VLALVFLSMT WNFAFLLMAI DRLRSEVENL ALLDDLTGIS NRRHLLQRMS
EQCTLSMSTG EPFAVLAIDL DGFKAINDGH GHAAGDECLR RFSRAAQSRL RPGDLLARAG
GDEFCVVMPG TTLREGAMIA RYILDESRAV SERGEAGIKI AASIGIAQWT PQIGQHPERL
IAAADVALYN AKKLGKDRYA VYEPAPEPPP ETHLPTPETL RKIA
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