| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1832 |
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| Symbol | |
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| ID | 6409491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1969970 |
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| End bp | 1971484 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642711720 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001990833 |
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| Protein GI | 192290228 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG2703] Hemerythrin
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR02481] hemerythrin-like metal-binding domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.252767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATAT CCGCAGATCC AGATCGCGAC TGGAAGAATC GCATTTCGGC GCAGGCTCTC
AGGCAGATCC AGGAGCTCGA TCTCGCCCTC GATCCGAACA GCTTCGAGCT GTGGTACACG
TTCTTCTCCG GCCGGCACAA AGCGCTCACT GAGGCCGTCA ACGCACTTTT GGCCGCGACC
GGCCGGCCTA GCGCAGGTGA CATTTCGGGC CTGTACGAGC AGTTTCTGTA TCAGACCAAA
GCGGTCACCC GCATCCATGC GATCGGCGCG TTGGTGCACA GCCAATCGAA CGCGCTGATC
GACGTGATCG AAGAGGCGTC GGATGCGACC CATGGCTACG AGACCCGGCT GTCGAGTGCG
GCGCCGCGCT TGGCGCTCGG ACGGATGGAA GACGGGCTGC AGGCGATCGT CGACGAACTG
CTGACCTGGA CGATGGACAT TCAGACCGCC AACGCGGTGC TGGTGGATCG GCTGAGATCC
GCCGCCGATC AGGTTCGCAA GTTGCAGGAT CAGTTGGATC AGGTCCGGCT CGAGAGCATG
ACCGACCCGC TCACCGAGGT CGGCAACCGC AAGTACTTCG AGAACCAATT GTCCCTGCAT
GTCGCCAGCG ACGACAGTGG CCCCCTCGCG CTGCTGATCG TCGATCTCGA CAACTTCAAG
CAATTCAACG ATCGCCACGG CCATGTCGTC GGCGACGACG TGCTGCGGCT CGCGGCTTCG
ACCATCAAGC ACAATTGTCG CCGTGACGAC GTGGTTTGCC GCTATGGGGG GGACGAGTTC
GCCATCATCC TCCCCCGTAC GCCGCTGCGC GAGGCGCTGC TGCTCGGCGA GGCGATCCGG
GCCGCGATCG CGGCGCGCGA GCTGCATCGC CGGTCGACCC ATGAGAGCCT CGGCCGGCTC
TTGATCTCGA TCGGTGCAGC CGAGTTCAGG CCGGGCGAGA CGGCGGATGA TTTCGTCGAG
CGTGCCGATC ATTGGATGTA CGCCGCCAAA CAGGCGCGAC GCGACAGGAC GCGGCCCGGC
CCCGACGCCG CCGCCCGCGA TCCCGGCGAG CGGCGTCCAG ACATCCTGTG GCACGAGACC
TACGCTTGCG GCGAGCCGAC GATCGACGCT CAGCACCGCG AGCTGTTCGA CCTCGCCAAC
GTCATTCTCG GTCCCGAGAT GGAGATGCTG GAGCCCGCCA GGCTGTCGGA GGTGGTCGAG
CTGCTACTGA CCCGCGTCGC CGAGCACTTT CAGTACGAAC AGGCCGTGCT CGAAGCGTCC
GGCTACGATG AATGTGGGCT GCACCGGATA GAGCACGACC ATCTGCTGAT CCGTGCCCGG
CAGGTGAGCG AGGCGGTGGT CTCCGGTCAA CAGTCGCTTG GCGAACTACG CGCGTTCCTG
GTCAATTCGG TCATCCTCGG TCACATGCTC AAGGATGACC GGCGGTTTTT CCCGTTGTTC
GACCGTCGAG CATCATCCGC CACGCAGAGT GGGGCCGCAC CGGTGCATCG CGAGCGACGG
CGGTTGTCGC TGTAG
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| Protein sequence | MTISADPDRD WKNRISAQAL RQIQELDLAL DPNSFELWYT FFSGRHKALT EAVNALLAAT
GRPSAGDISG LYEQFLYQTK AVTRIHAIGA LVHSQSNALI DVIEEASDAT HGYETRLSSA
APRLALGRME DGLQAIVDEL LTWTMDIQTA NAVLVDRLRS AADQVRKLQD QLDQVRLESM
TDPLTEVGNR KYFENQLSLH VASDDSGPLA LLIVDLDNFK QFNDRHGHVV GDDVLRLAAS
TIKHNCRRDD VVCRYGGDEF AIILPRTPLR EALLLGEAIR AAIAARELHR RSTHESLGRL
LISIGAAEFR PGETADDFVE RADHWMYAAK QARRDRTRPG PDAAARDPGE RRPDILWHET
YACGEPTIDA QHRELFDLAN VILGPEMEML EPARLSEVVE LLLTRVAEHF QYEQAVLEAS
GYDECGLHRI EHDHLLIRAR QVSEAVVSGQ QSLGELRAFL VNSVILGHML KDDRRFFPLF
DRRASSATQS GAAPVHRERR RLSL
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