| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1777 |
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| Symbol | rpsD |
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| ID | 6409434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1911781 |
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| End bp | 1912398 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642711665 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001990780 |
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| Protein GI | 192290175 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAAAGC GCGCTGAAGC TAAGTATAAA ATCGACCGCC GGATGGGCCA GAACATCTGG
GGCCGTCCGA AGAGCCCGGT CAACCGCCGC GAATACGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGGGCA AGCTGTCCGA CTTCGGCGTC CAGCTCCGCG CCAAGCAGAA GCTGAAGGGC
TACTACGCCA ACATTTCCGA GCGTCAGTTC CACGCCATCT ACGTCGAGGC GACCCGTCTG
AAGGGCGACT CGGGCGAGAA CCTGATCGGC CTGCTCGAGC GCCGTCTCGA CGCCGTGGTG
TACCGCGCCA AGTTCGTGTC GACGATGTTC GCGGCCCGCC AGTTCATCAA TCACGGCCAC
ATCAAGGTCA ACGGCAAGCG CGTCAACATC CCGAGCTACA AGGTGCGGGT CGGTGACGTG
ATCGAGGTCA AGGAAGCCTC CAAGCAGCTC GCCTTCGTGC TCGAAGCCAG CCAGCTCGCC
GAGCGCGACG TGCCGGACTA CATCGAGGTC GACCACAACA AGATGACCGC GAAGTTCGCC
CGCATCCCGG CTCTCTCCGA CGTGCCGTTC GCGGTGCAGA TGGAGCCGCA TCTGATCGTC
GAATTCTATT CGCGCTAA
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| Protein sequence | MTKRAEAKYK IDRRMGQNIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGV QLRAKQKLKG
YYANISERQF HAIYVEATRL KGDSGENLIG LLERRLDAVV YRAKFVSTMF AARQFINHGH
IKVNGKRVNI PSYKVRVGDV IEVKEASKQL AFVLEASQLA ERDVPDYIEV DHNKMTAKFA
RIPALSDVPF AVQMEPHLIV EFYSR
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