| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1706 |
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| Symbol | |
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| ID | 6409363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1828987 |
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| End bp | 1830546 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642711594 |
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| Product | phytoene desaturase |
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| Protein accession | YP_001990709 |
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| Protein GI | 192290104 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAGACC AGACCGCGAG GAATCGCGTC GTAGTGATCG GCGCCGGCGT CGCGGGACTG
ACGTCTGCGC TGACGCTGGC CGCACGCGGC TTCGACGTCA CCGTGCTTGA ACGCGCCGCC
GCCCCCGGCG GCAAAATGCG CGAAGTGGCC ATCGGTCCGG CGCGGATCGA CAGCGGCCCG
ACCGTGTTCA CGATGCGCTG GGTGTTCGAG GAGCTGTTCG CCGGCATCGG CCTGAACTTC
TCCGACCATG TGCGCCTACG TCCTTTGTCG GTCCTGGCCC GCCACGCCTG GGACGACACC
CAGCATCTCG ACCTGTTCGC AGATGAGGCC CGCTCGGCCG ATGCGATCGG CACATTCGCC
GGTGCTGCGG AAGCGAAACG TTATAGGCAG TTTTGCGCCG ACAGCCGGCG CATCTACGAG
ATTCTGGAAA AGCCATTCCT ACGCGCCACC GCGCCGAGCC TGCCGAAGCT GGCGACCGCC
GGCGGCCTCA GCGGCCTGCT CGAGCTGCGC AAGATCCGCC CGTTCACTAC GATGTGGAAA
GCACTCGGCG ATTACTTCCA CGATCCGCGG ATGCGGCAGT TGTTCGGCCG CTATGCGACC
TATTGCGGTT CCTCGCCCTT CGATGCGCCC GCGACGCTGA TGCTGGTCGC ACATGTCGAA
CACGAAGGCG TCTGGATCAT CGAAGGCGGC ATGCATGCGC TGGCGCAGGC GCTCGCCAAT
TGCGCCACCA GCTTCGGCGC CACGATTCGC TACGAGCAGA GCGTGCGCGA GGTGATGGTC
TCCGGCGGAC GCGCTGCCGG CGTGGTCCTG GAAAGCGGCG AGCGGATCGA AGCGCATTCG
GTGATCGTCA ACGCCGATGT CGGTGCGCTG CCGGCCGGAC TGTTCGGCGA AGCGGTGCGC
TCTGCGGCCG CACCGTTGGC ACCGCGGTTG CGATCGCTGT CGGCCATGAC CTGGAGCATG
GTGGCGAAAA CTGAGGGCTT CCCGCTGAGC CGCCATTCGG TGTTCTTCTC GCGAGATTAT
CCACGGGAGT TCGCCGAGAT CTTCGGCCGC GGCGAGGTGC CGAGCGAGCC GACCGTGTAT
GTCTGCGCTC AGGACCGCAT CGACGACGAG GCACGCTTGG CGGCAGGCGG CGAAGAGGAA
TTGCTGGTGT TGATCAACGC GCCGCCGGTC GGCGATCGCA AGAGCTTCGA TCAAGCCGAG
GTCGCGCGCG CCGCCGAACG CGCGTTCGGC GTGCTGCAGC GTTGCGGACT GCGGATCGAT
GCCGATCCGG GCAAGACCCA GGTGACAACG CCGGCGGATT TCAACCGGCT GTTCCCGGCC
ACCGGCGGCG CGCTGTATGG TCGCGCCTCG CACGGCTGGA GTGCCTCGTT CGAACGTCCC
GGAGCGGGTA CAAAGATCGC CGGCCTTTAT CTGGCCGGCG GCAGCACCCA CCCGGGCCCC
GGCGTGCCGA TGGCCGCCCT GTCGGGTCGC GCTGCGGCGG CGACCCTGTT CGCCGATCTC
GGCTTCACAC CCGCCGGCCC GAAGCCTGCG CTTCGCCCGG CTGCTTCCAA GACGACGTGA
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| Protein sequence | MRDQTARNRV VVIGAGVAGL TSALTLAARG FDVTVLERAA APGGKMREVA IGPARIDSGP
TVFTMRWVFE ELFAGIGLNF SDHVRLRPLS VLARHAWDDT QHLDLFADEA RSADAIGTFA
GAAEAKRYRQ FCADSRRIYE ILEKPFLRAT APSLPKLATA GGLSGLLELR KIRPFTTMWK
ALGDYFHDPR MRQLFGRYAT YCGSSPFDAP ATLMLVAHVE HEGVWIIEGG MHALAQALAN
CATSFGATIR YEQSVREVMV SGGRAAGVVL ESGERIEAHS VIVNADVGAL PAGLFGEAVR
SAAAPLAPRL RSLSAMTWSM VAKTEGFPLS RHSVFFSRDY PREFAEIFGR GEVPSEPTVY
VCAQDRIDDE ARLAAGGEEE LLVLINAPPV GDRKSFDQAE VARAAERAFG VLQRCGLRID
ADPGKTQVTT PADFNRLFPA TGGALYGRAS HGWSASFERP GAGTKIAGLY LAGGSTHPGP
GVPMAALSGR AAAATLFADL GFTPAGPKPA LRPAASKTT
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