| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1702 |
|---|
| Symbol | |
|---|
| ID | 6409359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1826582 |
|---|
| End bp | 1827418 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642711590 |
|---|
| Product | UspA domain protein |
|---|
| Protein accession | YP_001990705 |
|---|
| Protein GI | 192290100 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGC TCAAGCGAAC CCTGGTCTTG CTCGGCGATA CGCCGTCGTC GCTGGCGGCG
CGCGCTTATG CGTTCCGCCT GGTGCAGCAG ACCGGCACTG ACCTAACGGG GCTCGCCGGC
GTCGATCTCG GCGAGGTCGA AGCGCCGATG CTCGGCGGCA TCGGCATGTC GGCCTACCAG
ACCCAGCTGC AGACCGAGCT GAAACGCCAA GCCGATGCCA CTCGCGAGCG CCTGCAGGCA
GCGTTCTCGG ACGAATGCCG CAGCCGGTCG ATCGCATGCG CAGCGCTGTC GTTCGAGGGC
GACGCGGCCG ACGGCTTTCG CCTCGCGACA GAAACCCGCG ATCTCGCCAT CGCCGGCCAC
GACACCGGAT TCGGCGGCAG CCAGGAGCCG CTGTCGGCGA TGATCGCCAA GCTGGTGGTG
CGAACGCCGC GGCCGCTGAT CGTCTGTCCT GACGAACTAC CGGCGGGCGA CGCGGTGCTG
ATCGCCTATG ACGGCAGTCT TCCGGCGATG CGCGCGCTGC AGGTGTTCGC GCTGCTGGGC
CTCGGCGACG GCAAACAGAT CTGCGTGCTT GCGATCGACC GCGACGAGGC TGCGGCCGTT
CGCAAGGCCA ACGCCGCTGC GGAGTTTCTG AAGATTCACG GACACGCGGC GCAAGCCGTA
CCGAGCTCGT CGGGCGACGA CCCTGCGGAC CTAATCCGCT CTGCCGTTGC CGAGCGCAAC
ATCGGCACGG TGGTGATGGG CGCGTACGGA AATCGCGGAT TCCGCGAAGC GCTGTTCGGC
TCGACCACGG ACGCGTTGGT CGACACCCCG CCCTGCGCGC TGTTTCTGTA TCACTGA
|
|---|
| Protein sequence | MSMLKRTLVL LGDTPSSLAA RAYAFRLVQQ TGTDLTGLAG VDLGEVEAPM LGGIGMSAYQ
TQLQTELKRQ ADATRERLQA AFSDECRSRS IACAALSFEG DAADGFRLAT ETRDLAIAGH
DTGFGGSQEP LSAMIAKLVV RTPRPLIVCP DELPAGDAVL IAYDGSLPAM RALQVFALLG
LGDGKQICVL AIDRDEAAAV RKANAAAEFL KIHGHAAQAV PSSSGDDPAD LIRSAVAERN
IGTVVMGAYG NRGFREALFG STTDALVDTP PCALFLYH
|
|---|
| |