Gene Rpal_1672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_1672 
Symbol 
ID6409329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp1791876 
End bp1792568 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content67% 
IMG OID642711560 
ProductNnrUfamily protein 
Protein accessionYP_001990675 
Protein GI192290070 
COG category[S] Function unknown 
COG ID[COG4094] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.552147 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCCGGCT GGACTGAATT CGTCGCCGCC TTCGCCGTGT TCCTGCTCAG CCACGCGATT 
CCGGCACGGC CGGCGGTGCG GGCGAGACTG GTTGGCGCGC TCGGTGAGCG CGGCTTTCTG 
ATCGCCTACA GCATCGAGTC GCTAGTCGTT CTGACTTGGC TGATCGTCGC CACCGAGCGG 
GCGCCGTTCG TTGAGCTGTG GCCGTTCGAG ACCTGGCAGA TGTGGGTGCC TAACCTGGCG 
CTGCCGCTCG CCTGTCAGTT TGCGGCGTTC GGCATCGGCG CCGCCAATCC GCTATCGTTC 
GGCGGCAATC CGCGGACACC CTTCGATCCG CATCACCCTG GCGTGGTCGG CATCGTCCGG 
CATCCGCTGC TGTGGGCGAT CGGGCTGTGG GCCGGCGCGC ATGTCGTGCC GAACGGTGAC 
CTCGCACATG TACTGCTGTT CGGCTTCTTC GCGATGATCG CGGTAATCGG CATGCTGATC 
ATCGATCGCC GCAAGCGCCG CCAGCTCGGC GCCGAGCGCT GGGCCGAGCT TGTGGCGCGG 
ACCTCGTTCT GGCCGTTCGC GGCCCTGATC AGCGGCCGCT TCAGGCCGCA GACTTGGCGG 
ATCAGTCCGC TGCGGTTGTG CATCGGCTTA GCCGCGTGGC TCTCGCTGCT GCTGCTGCAT 
CCGCTGGTGA TCGGCGTCTC ACCGCTGCCC TGA
 
Protein sequence
MSGWTEFVAA FAVFLLSHAI PARPAVRARL VGALGERGFL IAYSIESLVV LTWLIVATER 
APFVELWPFE TWQMWVPNLA LPLACQFAAF GIGAANPLSF GGNPRTPFDP HHPGVVGIVR 
HPLLWAIGLW AGAHVVPNGD LAHVLLFGFF AMIAVIGMLI IDRRKRRQLG AERWAELVAR 
TSFWPFAALI SGRFRPQTWR ISPLRLCIGL AAWLSLLLLH PLVIGVSPLP