Gene Rpal_1566 details

Gene Information

• Locus tag: Rpal_1566
• ID: 6409223
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 1670106
• End bp: 1675244
• Gene Length: 5139 bp
• Protein Length: 1712 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 642711459
• Product: outer membrane adhesin like proteiin
• Protein accession: YP_001990574
• Protein GI: 192289969
• COG category: [C] Energy production and conversion
• COG ID: [COG0584] Glycerophosphoryl diester phosphodiesterase
• TIGRFAM ID: [TIGR01965] VCBS repeat

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.6196
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGTCG ACGTCACTCT CTACGCGCAC CGCGGCACCA ACCCGTACAC CGACAATTCG 
ATCGACGCTT ATCGTTGGGG ATTCAACTAC GGCGCCGACT ATGTCGAGAC CGACTTCCGT 
CTGACCAAGG ACGGCGTGGT GGTCAGCTAT CACGACGATC TGTCGGGCGG CATCGCCAAC 
ATGACCTATG CGGAAGTCAA GGCGCAGGTG CCGTCGATCG TGACGCTCGA CGAACTGATC 
GATCTGACCA AGACGATGGA GACCGAAACC GGTCGCAAGC TCGGCATCCT GATCGAGAAC 
AAGGCCGCCG ACAATGCGAC CGCCGAAGCG ATCATCAAGG TTCTGGTGGC TCACGACTTC 
GCCGACCCGG AGCGGATCGT GTTTCAAACC TTCGGATCGG AGCTGCCGTT CGTTCGCAAC 
ACGCTGTTTA CCAAGTACGG CGTCGATCTC CCGCTGGTGC AACTGACGGG CAGCGCTCTC 
ACCGCCGAGA GCATCGCGCG CTACGCGAGC TATGCGGATG GTGTCGCGCC GACGATGGCG 
TCGCTGACGC CGGAGCTGGT CGCAGCAGCC CACGCGGCCG GCCTGAAGGT CAACGGCTGG 
ACCGTCGACG GAACCGTTGC GGACGTCCGG AACGCGCTCA ATCTCGGCGT CGACGGCATC 
ATCAACGACA ATACCCAACT GGCGCGTCCT GCGCTCGAGG CGCTCGTCAA CAACACCAAC 
GTCGTCTATG GCACCGAGCA GTGGGATGTG GTGAACGGCA CCGCCGGTGC CGACAAGGTC 
TACGCGATGC ACGGCGACGA CGTTGTGCGT GCAGGAGCCG GCAACGACGT GATCTACGGT 
GACGCTGGCA ACGATCTGCT GTTCGGTGCT GGTGGCTCCG ATCAACTGAT CGGCGGGAGC 
GGCGACGATT TCCTGGACGG TGGCGAAGGC ACCGATGTGC TGACCGGCGG CGTCGGCAAC 
GACGTCATCG TCGCGACCGG TGACGAGCTG ATCTTCCACG CCGGCGACGG GATCGACCTG 
GTCTCGCTGG ACAGCGCAAG CACGATCCGC CTTGATGGCG TGACTTCGGC GAACGTCAGT 
GTGATCCGCA TGGACAATCA TCTGATCGTG CGCGCCGGCA ATGATGCGCT GATCCTCCGC 
GACGGGGTCA ATCCTGCCCA CCAGCCCGGG TCGATCACGA CCTCCGATGG CGTGACGTTC 
ACCGGCGCCC AGCTCGCGGC GATGGCCGTC GCCGGGACGG ATGCCGAGAT TGCGGCGCTG 
CTGCCGCGCC TCGAGGCGGT GCTGGCTTCC GCGCCGGCCT TTGCGACACC ATCGACCATT 
GCGGTCGGCA CCGACCTGAT CGCGGAGGGC GACTTCGGCG GCGGAGTCCT GACCCGGCAC 
ATCGAAAACG CCGAGACGGG CGCGGTCTAT CGCCTCAGCT TCTCGCTAGC TGATCTGCCG 
ACGGGAGAAG ACGGTGTCAG CGTCAAATGG GGCGGACAGG TAATCTATCA GGGGATTCCC 
TCGGCTGCCG GCAGCAAGCT GCATTTCATC GTCACGGGTG GCACCGGCGA TGGATCCAAC 
GAGCTGATCT TCGAAGGCGC CAGCGGCAGC TTCGGCGCAG AACTCGACGA CGTTCATCTC 
GTCAAGCTGT CCGACCCGGT GCTGCCGGCA CCCGGCAATG TCGCGCCGGT GGCCGACGAG 
ACGCATCATG TCGTCAGCCA GATGTTGCCC CTCAACGGCA AGGTTGCGGC GGTGGACGCC 
AACGGTGACG CGCTGACCTA CAGCGTCGGC GACGGTCCGG CGCATGGCAC TCTCGCTTTC 
GACGTGAGCG GCAACTATCG CTACACTGCA GCCGACGGCT TTGTCGGTGA GGATCGCTTC 
ACCTTCCTTG CCAATGACGG GCATGGCGGC TTCGTCGAGC AGGCGGTCAA CCTGACGGTG 
GTGGCTGGCA TTCCGGTCGG CGCCGACCTG ATCGTCAACG GCAGCTTCGA GGATCTGAGC 
GAATCCTCCG GCAACAACGG CACCGGTGAC TGGGGCTACC GCAACCCGGA CGGACAGATC 
GTCGGCTGGA CCAATGTCAA CAACAAGCGC ATCGAGCAGC ACTGGGACAA CTACGGCGGC 
ATTGTCGCCA AGGACGGTCG GATCTGGATC GATATGGACC ATTCGCAGAC GGGAACGACC 
GTCGACCGGA TCGGTCAGTC GATCGCGCAT GTCGAGGCCG GCGCGACCTA TAGGGTGAGC 
TTTTCGCTGT CCGACTCCGA TGCGGTGAAC CACGACGACG GCGTGAAGGT GCTGTGGAAC 
GGCGAGGTGA TCTTCGACGG CAAGCCGCCC CAGACCAGCG CCGCCTGGAC GACCTTGAGC 
TTCGATGTGG TCGGCGGCTC TGGCAACGGG ACCAACAGGC TTGAATTCAT CGACACCGGC 
GTATCCGACT CCTGGGGCGC CGGCGCGGCA TTGGACGACG TGCACTTCGT CAAGGTCGCC 
AACGCCGGCG ATGCCCTGCC AGCAAACCAC GCTCCGATTG CCACGGACGA TCATGCCGAG 
GGGCTCAAGG ACGTCGTCAT CACGGGCCGG CTCACGGCGT CGGATCAGGA CGCTGGCGCC 
TCGCTGATCT ACAGTCTCGA CACGGGGCCG TCCCACGGCA CGGTGTTCGT CTATACCGAT 
GGCAGCTATC GCTACACGCC GACCACCGGC TTCTCCGGCA CGGACAGCTT CACGTTCCTG 
GTGGATGACG GGCGTGGCGG CAAGGATACC GCGACGCTGG GTCTGACCAT CAAATCGTCC 
TCGTCCGAGG TTGCGATCGG CACCGACCTG ATCGTCAACG GCAGCTTCGA GGACATCAGC 
GAGTCCGGCA ACTACAATGG TGGCTCCGAT TGGGGCTACC GCAACAACGA CAAGCAGATC 
GTCGGCTGGA CCAACGTCAA CCGGATCGAG CAGCATCTCG ACAATTACGG CGGGATCCAG 
GCCATGGACG GGAAGTTCTG GATCGACCTC GACAGCTCCA ATCTGGCACA GCGGAACAAG 
CTCGGCCAAA CGATCACCGG CGTTGAGACC GGTGCAATCT ACCGGGTGAG CTTCTCGCTC 
TCGGACTCGG ACAATGTCCG CTACGACGAC GGCGTCACCG TGCTATGGAA CGGTCAGGTC 
GTCTTCAGCG GCCTGCCGCC GCAGACCTCC GCTCATTGGG CGACGCTGAG CTTCGACGTG 
GTGGGCGGCT CCGGGAATGG TTCGAACCGG CTGGAGTTCG TCGACACCGG CGTAGCGGAC 
TCTTGGGGCG CCGGCGTCGC GCTGGACGAT GTCCACTTCG TCAAGATCGC CAACGCCGGC 
GACAGCCTGC CGGCCAATAG CGCGCCTGAC GCGACCGACG GGCACATGGC GGGCCTGGTG 
AATAGCTTGA TCATCGGTCA GCTCACCGCG TCCGACTCCG ATGCAGGGGC CGCACCTGTG 
TTCAGTCTCG GACAGGGGCC GTCGCACGGT TCGGTGCTGG TCTACAGCGA TGGCACTTAC 
CGATACACGC CAACGACTGG CTATGTCGGC ACGGACAGCT TCACCTTTGT GGTCGATGAC 
GGGCGTGGCG GCAAGGATAC GGCAACCCAG AGCCTGACCA TCAGCCCGCC CAATACCGTA 
CCGGTGGCGT CCGACGACGT CGGTCTCGGG ACGGAATACG GCACCGTGCT GACGATCGGA 
GCATTGACTC TGCTCGCCAA TGACAATGAC GCAGACAGCG ATCCGTTGGC GATCCTGTCG 
GTGGCCAATG GCGCCGGCGG CACGGTTTCG CTCGACGATG TCGGCAATGT CGTCTTCGCT 
CCGGCCGAAG GGTTCTCGGG TGATGCGACC TTCAGCTACA CGGTGTCCGA CGGACGGGGC 
GGGATCGCAA CGGCGAACGT GACTGTGATA GTCGTGCCGC AGCCCGAGCC TCTGGTCGGG 
ACATCGGGCG ATGATGTCCT GAATGGGACG TCGCGTGACG ATGTCATGGC GGCGGGCGAG 
GGCGACGACG AAGTCTTCGG CGTCGCCGGC AACGACACGA TCGACGGCGG CGCCGGTGAC 
GACCGGATCG ATGGCGGCGA CGGGGACGAT ATCCTCGCCG GCGGTGACGG CGACGACGAG 
CTGATCGGCG GTGCGGGTAG CGACATTCTT GTCGGCGGCG CTGGCGATGA CGAACTCGAC 
GGCGGTGACG GCCACGACGT GGCGGACTAC ACGGCCGACA GCGCCGGCTT CGTGGCCGAC 
CTGTCGTCGG GACAGGCCGC CGGCGACGAG ATCGGCTACG ATAGCTTGCG CAACATCGAA 
ACCGTGCTCG GCGGTTCGGG CAACGACACC CTGATCGGCG ACGGCAACGC CAACACCCTC 
GTCGGCAATG TCGGCAATGA CACCCTGATC GGCGGCGGCG GCGACGACGT CCTGCGCGGT 
GGCGCCGGCG ACGACACCAT CGACGGCGGC GCCGGCTTCG ATACGCTCGA CCTGTCCGAC 
GCCACCGGGG TCGTGACCAT CAGCTTCACG GCCGGTACCG CGACCGGTGC AGGCATCGGT 
ACCGACCACT TCACCGGCAT CGAGAGCTTC GTCCTCGGTG AGGGGGCGGA TCGTGTCACC 
GGTGGCAACG GCGCCGATGT GATCAACGGC GGTGGCGGCA ACGACGTCAT CGCCGGCGGC 
GCCGGCAACG ACAAGCTGTT CGGTGGTGCC GGTGACGACA GCCTCGACGG CGGTTCGGGC 
GACGATGTCG TCGACGGCGG CATCGGCAAC GACACGCTGA AGGGCGGTTC GGGCGTCGAT 
ATCATCTCCG GCGGCGATGG CAACGACGAC ATCGATGGCG GTTCGGAGAA CGATATTCTC 
AACGGTGGTG CCGGCAACGA CATCATCAAG GGTGGCTCCG GCGCTGACAT CATCACCGGC 
GGTGCCGGCA ACGATATTCT GACCGGCGGC TCGGGGGCGG ACGTATTCGT GTTCGCGGCC 
GGCTTCGGCA AGGACATCGT CACGGACTTC GCCACCAAGG GCAGCTCGGC CGACGTGCTG 
CAGTTCTCCA GCAGCATGTT TGCGAACTTC ACCGACGTGA TGTCGCACAC CACGCAGGTC 
GGCAACGACG TCGTCGTGAC GCTCGATGCC GACAACAGCC TGACGCTGGC CAATACGCAG 
ATCGGCTCGC TCGCCGCAGA CGACTTCCGC TTCGTCTGA 

 

Protein sequence

MSVDVTLYAH RGTNPYTDNS IDAYRWGFNY GADYVETDFR LTKDGVVVSY HDDLSGGIAN 
MTYAEVKAQV PSIVTLDELI DLTKTMETET GRKLGILIEN KAADNATAEA IIKVLVAHDF 
ADPERIVFQT FGSELPFVRN TLFTKYGVDL PLVQLTGSAL TAESIARYAS YADGVAPTMA 
SLTPELVAAA HAAGLKVNGW TVDGTVADVR NALNLGVDGI INDNTQLARP ALEALVNNTN 
VVYGTEQWDV VNGTAGADKV YAMHGDDVVR AGAGNDVIYG DAGNDLLFGA GGSDQLIGGS 
GDDFLDGGEG TDVLTGGVGN DVIVATGDEL IFHAGDGIDL VSLDSASTIR LDGVTSANVS 
VIRMDNHLIV RAGNDALILR DGVNPAHQPG SITTSDGVTF TGAQLAAMAV AGTDAEIAAL 
LPRLEAVLAS APAFATPSTI AVGTDLIAEG DFGGGVLTRH IENAETGAVY RLSFSLADLP 
TGEDGVSVKW GGQVIYQGIP SAAGSKLHFI VTGGTGDGSN ELIFEGASGS FGAELDDVHL 
VKLSDPVLPA PGNVAPVADE THHVVSQMLP LNGKVAAVDA NGDALTYSVG DGPAHGTLAF 
DVSGNYRYTA ADGFVGEDRF TFLANDGHGG FVEQAVNLTV VAGIPVGADL IVNGSFEDLS 
ESSGNNGTGD WGYRNPDGQI VGWTNVNNKR IEQHWDNYGG IVAKDGRIWI DMDHSQTGTT 
VDRIGQSIAH VEAGATYRVS FSLSDSDAVN HDDGVKVLWN GEVIFDGKPP QTSAAWTTLS 
FDVVGGSGNG TNRLEFIDTG VSDSWGAGAA LDDVHFVKVA NAGDALPANH APIATDDHAE 
GLKDVVITGR LTASDQDAGA SLIYSLDTGP SHGTVFVYTD GSYRYTPTTG FSGTDSFTFL 
VDDGRGGKDT ATLGLTIKSS SSEVAIGTDL IVNGSFEDIS ESGNYNGGSD WGYRNNDKQI 
VGWTNVNRIE QHLDNYGGIQ AMDGKFWIDL DSSNLAQRNK LGQTITGVET GAIYRVSFSL 
SDSDNVRYDD GVTVLWNGQV VFSGLPPQTS AHWATLSFDV VGGSGNGSNR LEFVDTGVAD 
SWGAGVALDD VHFVKIANAG DSLPANSAPD ATDGHMAGLV NSLIIGQLTA SDSDAGAAPV 
FSLGQGPSHG SVLVYSDGTY RYTPTTGYVG TDSFTFVVDD GRGGKDTATQ SLTISPPNTV 
PVASDDVGLG TEYGTVLTIG ALTLLANDND ADSDPLAILS VANGAGGTVS LDDVGNVVFA 
PAEGFSGDAT FSYTVSDGRG GIATANVTVI VVPQPEPLVG TSGDDVLNGT SRDDVMAAGE 
GDDEVFGVAG NDTIDGGAGD DRIDGGDGDD ILAGGDGDDE LIGGAGSDIL VGGAGDDELD 
GGDGHDVADY TADSAGFVAD LSSGQAAGDE IGYDSLRNIE TVLGGSGNDT LIGDGNANTL 
VGNVGNDTLI GGGGDDVLRG GAGDDTIDGG AGFDTLDLSD ATGVVTISFT AGTATGAGIG 
TDHFTGIESF VLGEGADRVT GGNGADVING GGGNDVIAGG AGNDKLFGGA GDDSLDGGSG 
DDVVDGGIGN DTLKGGSGVD IISGGDGNDD IDGGSENDIL NGGAGNDIIK GGSGADIITG 
GAGNDILTGG SGADVFVFAA GFGKDIVTDF ATKGSSADVL QFSSSMFANF TDVMSHTTQV 
GNDVVVTLDA DNSLTLANTQ IGSLAADDFR FV