Gene Rpal_1560 details

Gene Information

• Locus tag: Rpal_1560
• ID: 6409217
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 1655152
• End bp: 1655817
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 642711454
• Product: transcriptional regulator, TetR family
• Protein accession: YP_001990569
• Protein GI: 192289964
• COG category: [K] Transcription
• COG ID: [COG1309] Transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTATCA AGAAGCCCCG CAAGAGGAAC GATCCCGCCG AGAGCACGGC CCTGATCAAA 
AAATGCGCGA TCGCGCTGTT CGCGGCAAAG GGTTACGCCA ACACTAGTCT GGATGAGATC 
GCGGCGGCGG CGAAATTCAC AAAAGGTGCA ATCTACTACT ACTTCCGGAA CAAAGAGAAG 
TTGCTGCTTG CCATTCTCGA CGACATCGAA GCCCGCTCCG TGGCATTGAC CGCAGAGCGA 
GTGCTCGGCG GTGACGGCAC TACCCTCGAT CGCCTGTTGC GGTTCATCAT GTCGCAAGCT 
CGCTGGGCGG CGGCTAACCC CAACGATCTG GCGATTGTAA TGCTGACCTC GATCGAGTCC 
GCCAACAAGC GTGGTAAGGT CAGCAAGCGC ATCACTAAGC TCTACGACTC GCTGCGAGAG 
ACCGTGGAAG CGTTGCTACA TCGAGCCCGC GCTGCCGGAG AGCTGGCCGA CGATGCGCCG 
GTGGAGAAAT TTGTGCTTGC GGTATTGGCG CTGCATGACG GCAACATGTT GCTGTGGTAC 
CGCAGCGGCC TCGATCCGCA GGTCGGGCGG CTGGTGACGC GCGCCGCTGC GCAAGCCGTC 
GTCGAGCGTT ACAGCGAACT GCGCCGCAGC AAAAATCACG CCTCCTCGCT GCGGGCAACG 
GCCTGA 

 

Protein sequence

MPIKKPRKRN DPAESTALIK KCAIALFAAK GYANTSLDEI AAAAKFTKGA IYYYFRNKEK 
LLLAILDDIE ARSVALTAER VLGGDGTTLD RLLRFIMSQA RWAAANPNDL AIVMLTSIES 
ANKRGKVSKR ITKLYDSLRE TVEALLHRAR AAGELADDAP VEKFVLAVLA LHDGNMLLWY 
RSGLDPQVGR LVTRAAAQAV VERYSELRRS KNHASSLRAT A