| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1488 |
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| Symbol | |
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| ID | 6409145 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1571029 |
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| End bp | 1571880 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642711385 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001990501 |
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| Protein GI | 192289896 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.179165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCATC CCGCCATTGC CAAGGATCAG GTCGCCGTGG TCACCGGCGG CGCATCGGGG
ATCGGCTTTG CGGCCGCCAA GCGGTTTCTG CAGGCCGGCA TGAAGGTGGC GATCGCGGAT
CTGAACGCCG ATCATCTCGC CCGCGCCGCG GAGCTGCTGG CGCATGTCGC CAGCAGCGGA
GCCGACGACG TGCTGGCGAA GGAAACTGAC GTCGCCAAAC CCGACCAGCT CGAGGCGCTG
CGCGCCGCCG TCACCGCGCG GTTCGGCGAC GTCGACGTGG TGATGAACAA TGCCGGCATC
GAGCCGCCGA GCACCGCGCT CGGCCCGCGC GAGGCCTATG AGCGCATCCT CAGCGTCAAT
CTGTGGGGGG TGATCCACGG CTCGCAGATC TTCGCGCCGG ACATGATCGC GCGCGGCCGG
CCGGGGCTGA TCATCAACAC CGGCTCCAAG CAGGGCATTA CCACGCCGCC GGGCAATCCG
GCCTACAATG TCTCCAAGGC CGGTGTGAAA GCCTATACCG AAGCGTTGGC GCATGAGCTG
CGCACCACCG AGGGCTGCGC GGTGACGGCG CATCTGCTCA TCCCCGGCTT CGTCTTCACC
GCGCTGACCG CGCGCGGGCG CAGCGAGAAG CCGGCCGGCG CCTGGACCGC CGAGCAGACC
GTGGACTTCA TGCTGGCGCG GCTTGAGGAC AGCGACTTCT ACATCCTGTG CCCGGACAAT
GACGTGCCCC GAAGCCTCGA CGAACGCCGC ATCGCCTGGG CCGCCGGCGA CATCATCGAC
AACCGCCCCG CGCTGTCGCG CTGGCACCCG GCCTGGGTCG ACCGCTTCAG GGCGTTCGTC
GAAGGGAAGT AA
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| Protein sequence | MPHPAIAKDQ VAVVTGGASG IGFAAAKRFL QAGMKVAIAD LNADHLARAA ELLAHVASSG
ADDVLAKETD VAKPDQLEAL RAAVTARFGD VDVVMNNAGI EPPSTALGPR EAYERILSVN
LWGVIHGSQI FAPDMIARGR PGLIINTGSK QGITTPPGNP AYNVSKAGVK AYTEALAHEL
RTTEGCAVTA HLLIPGFVFT ALTARGRSEK PAGAWTAEQT VDFMLARLED SDFYILCPDN
DVPRSLDERR IAWAAGDIID NRPALSRWHP AWVDRFRAFV EGK
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