| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1383 |
|---|
| Symbol | |
|---|
| ID | 6409040 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 1457133 |
|---|
| End bp | 1457588 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642711282 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_001990398 |
|---|
| Protein GI | 192289793 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.661134 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCG CCCTGTTTCA ACCCGACATC CCGCAAAACA CCGGCACTAT TCTTCGGTTT
TGCGCCTGTT TGAACGTTGA AGCGCACATC ATCGAGCCGG CCGGCTTTCC CACCTCTGAT
CGGCATTTCC GCCGCTCTGG GATGGACTAC CTGGATCAGG TGAGCATCGT CCGGCACGAT
TCCTGGCTAA AATTCGAGCA ATGGCGGAAA ACCGCGGGTT GCCGGCTGAT TTTACTTACG
ACCAAAGGTG AAAGGCCTTA TTTCGAACAG CGTTACCAAC CGACTGACGT GCTGATGCTC
GGCCGGGAAA GTGCCGGGGT CCCGGACGAC GTCGCGGCTG CCGCAGATGC CAGGGTAGTA
ATTCCTATGC AGCCCGGCCT GCGCTCGCTC AACATCGCGA TGGCCGCGGC CGTGGTGACC
GGCGAGGCGT TGCGGCAAAC CCAGTTCGCA CAGTGA
|
|---|
| Protein sequence | MRIALFQPDI PQNTGTILRF CACLNVEAHI IEPAGFPTSD RHFRRSGMDY LDQVSIVRHD
SWLKFEQWRK TAGCRLILLT TKGERPYFEQ RYQPTDVLML GRESAGVPDD VAAAADARVV
IPMQPGLRSL NIAMAAAVVT GEALRQTQFA Q
|
|---|
| |