| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1329 |
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| Symbol | |
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| ID | 6408986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1400293 |
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| End bp | 1401798 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642711228 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_001990344 |
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| Protein GI | 192289739 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.914458 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCGCT TTGATGCAGT GGTAATTGGC GCCGGGCTCG GCGGCCTGAC TGCGGGCGCG
ATCCTGGCCC GCGAAGGCCG CAAGGTGCTG GTGATCGAGC GCGGCAACTC GGTCGGCGGC
GCAGCCTCGA GCTACAAGGC CGGCGAACTG TTCGTCGAAG GCTCGCTGCA CATTACCGGC
AATCCGCAGC ACGGCCGCGA TCCGAAACAC AGCGCCTTGA GCCGCGCCGG CGTGCTCGAC
GCGGTGCAGT GGATTCCAGC CGGGGCGCTG TATCAGATGC GCGGCGGTCC GGTTGGCGAA
CCCTTCACAC TCCCAGACGA ATTCGCCGCT GCCCGCGACG CGCTGAACCA GCGCTTCCCC
CACGCGAGCG CCGGGATCGC ACAATGGCTC GGCGAACTCG AACGCCTTGC CGGAACGCTC
GGCGATGGCG GCCTCGACGC CGTGCTGGCA CTGGCGCCGG AGTATCCCGA TTGGCACGCG
CCGCTCGGCG ACAAGCTGCA GGCGCTGTTC GGCGACGACG AAGCGGTGAA GTGCGCGGTC
GCCGGCAACC TGTCCTACGT CCACGATGAT ATCGCCGCGC TGTGGTGGGT GCCGTTCGCG
ATGGTGCAGG GCAGTTTCCT GCTCAGCGGC GCGCGCTTCA TTCAGGGCGG ATCGCAGCGG
CTGTCGAGCG CGCTGGCCCG CGCGGTGCGC AAGGCCGGCG GCGAGGTGCT ACTCCGCCGC
GTCGTCTCCG GCGTGGTGAT GGGCGATCAT GGCGGCCCGC ATCAGGTCAC CCACATCGCC
CGCGACGGCG GTGACCCACA GACCGTCGAG GCCTCGACCG TGATCGGCAA TGCCGCGCCT
TCGACGCTGG CAAGCCTGCT TCCTGCCGGC CAAGCGAAGC TGCTCACCGA CAGCTACGCC
GATCGGACAC CATCGCTCTC GCTGTTCGCG CTGACGCTCG GCCTGTCCAG GCCGCCTCGC
GAATTCGGTG TCAGCAGCTA CGCCACGCAG TTGCTGCCGG ACTGGATGAC GACGCTGGCA
TCCTACGCCG AAGCCAAGAC GCTGATGGCG GACGAGCCGG GTGCGCGGAT GCCGCCGCTG
GCGATCGCCG ACTACACCGC GATCGATTCC GGCGTGCCGT CGCCGCCTTA CGTGCTGTCG
GTGGTTGGCC CGGACCGGGT GTCGAACTGG GACGGCCTCG ATCAGGACAC CTATCGGGCC
AAGCGCGCCC GCTGGCAGCA GGCGCTGCTC GCCCATCTCG ACCGCAGCTA TCCGGGCCTC
GCCGGCGCGG TGACGGCGGC GGCGTTCAAC ACCGCCTACT CGGTGCAGCA ATATCTCGGC
GCGCCGCAGG GCGCGGTCTA CGGCTTTGCG CCGCTGCTGC CGAACTCGGA TGCGCCCTAT
CGCACCCCGC GCACAGCCCT GCCAGGCCTG TATCTCGCGT CGGCTTATGC GGGCATCGGC
GGCTACAGCG GCGTGGTGCA GGCGGCGGAA GGATGCGCCG AGCTGATCCT GCAGGATCAG
AAGTAG
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| Protein sequence | MTRFDAVVIG AGLGGLTAGA ILAREGRKVL VIERGNSVGG AASSYKAGEL FVEGSLHITG
NPQHGRDPKH SALSRAGVLD AVQWIPAGAL YQMRGGPVGE PFTLPDEFAA ARDALNQRFP
HASAGIAQWL GELERLAGTL GDGGLDAVLA LAPEYPDWHA PLGDKLQALF GDDEAVKCAV
AGNLSYVHDD IAALWWVPFA MVQGSFLLSG ARFIQGGSQR LSSALARAVR KAGGEVLLRR
VVSGVVMGDH GGPHQVTHIA RDGGDPQTVE ASTVIGNAAP STLASLLPAG QAKLLTDSYA
DRTPSLSLFA LTLGLSRPPR EFGVSSYATQ LLPDWMTTLA SYAEAKTLMA DEPGARMPPL
AIADYTAIDS GVPSPPYVLS VVGPDRVSNW DGLDQDTYRA KRARWQQALL AHLDRSYPGL
AGAVTAAAFN TAYSVQQYLG APQGAVYGFA PLLPNSDAPY RTPRTALPGL YLASAYAGIG
GYSGVVQAAE GCAELILQDQ K
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