Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_1167 |
Symbol | |
ID | 6408823 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 1234562 |
End bp | 1236835 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 642711065 |
Product | (NiFe) hydrogenase maturation protein HypF |
Protein accession | YP_001990182 |
Protein GI | 192289577 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0068] Hydrogenase maturation factor |
TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCCGG CCGCGCCGCT CACCGCTGCC GCCGAACGCG CCCGGGTGCG CGTCCGCGGC GCGGTGCAGG GCGTCGGGTT CCGGCCGTTC GTGTACCATC TGGCGCAGCG CTATCGGCTC GGCGGCTTCG TGGCCAACGA TGCCGACGGC GTCCTGATCG AAGTCGAAGG GGCGGCGCTG CCGGAGTTCC TGGTCGCGCT CCGCCGCGAG GCGCCGCCGC TGGCGCGGGT CGACACCATC GAGACCGAAA CAGTTCGTGC GCGCGGCGAC AGGGACTTCG GGATCGCGGA GAGCCGCGGC GGGGTGGTGA CCACGCGGAT CGGGGCGGAC GCGGCGACGT GCGAGGCCTG CCTCGACGAT CTGTTCGATC CGGCGAGCCG GTTTTATCTC TACCCGTTCG TCAATTGCAC CCATTGCGGC CCGCGCTACA CGCTGACACG CGGCCTGCCC TACGACCGCG CCAATACCTC GATGGCCGGC TTTACGATGT GCGAGGATTG TCGTCGCGAC TATCAGGATC CGCACAACCG CCGCTTTCAC GCCGAGCCGA TCGCCTGCCC GCGCTGCGGC CCGCAGCTCA GCCATCCGAT CGAGGAGATC GTCGCTTGCT TGCGCGACGG CCGGATCGTC GCGCTGAAAA GCCTCGGCGG CTATCATCTG CTGTGCGACG CCACCAGCGA AGCCGCCGTC GTCGAGCTGC GCCGGCGCAA AGGCCGCGAC GCCAAGCCGT TCGCCGTGAT GGTTGCGTCC GAAGCTTCGC TGGATCGCAT CGTCATCGCG ACCGAGGCCG AGCGCGCGTT GGTGTCGTCG GTCGAGCGGC CGATCGTGCT GATGCGCGAT CGCGGTGCGC TGGCGCCGTC GGTTGCGCCC GCGCTCGATG CGGTCGGCGT GATGCTGCCC TATACGCCGC TGCATCATCT GATCTTCCAT GCCGCCATGG GCGCGCCCGC GGGACGCGAG TGGCAGCGCG CGCCGGTTGA TCTGGCACTG GTCGCCACCA GCGCCAATCT CGGCGGCGAT CCGATCGTGA CCGAGGATGC GCAGCGGCGG CTGGCATCTG TCGCTGATCT GATCGTCAGC CATGATCGAG ACATCGTGGT GCGCGCCGAC GACAGCGTCG CGCGGGTGAT CGACGGTGCA CCGTCATTCA TCCGCCGCGC ACGCGGCTTC ACGCCGCGGC CGATCACATT GCCGGGCGAG ACGCCGCCGG TGCTGGCGGT CGGCGCCTAC TTGAAAAACA CCATCACGCT GACCCGCGGC GGCGAGGCGT TCGTGTCGCA GCATGTCGGC GATCTCGCCA CTGCCGAAAC CGTGCGATTC TTTGAAGAGA CGGTGGACCA CCTGACGCGT CTCGTCGGCG TGAAGCCGGC CGCAATCGCG CACGATCTGC ACGCCGACTT CGCCTCGACC CGTTTTGCCG AGAGCCTCGC CGCCGAGCAT CTGGGCCTGC CGCTGATCGC CGTGCAGCAT CATCATGCCC ATGTCGCCTC GATCGCGGCC GAGCACGGCA TCGACACGCC GCTGCTCGGC CTCGTATTCG ACGGTCACGG CCTCGGCAGC GACGGCGGCA ATTGGGGCGG CGAACTGCTG CGCGTCGATG GCATGCGGTT CAGCCGGCTG GGCCACCTGA AGCCATTGGC GCTACCCGGC GGCGATGCGG CGGCACGCGA GCCGTGGCGA ATGGCGGCGG CGGCGCTTCA CGCGCTCGGG CGCGACGATG AGATCGCATC GCGCTTCGCC GATCAGCCCC GCGCGGCAGC GCTCGCCGCG ATGCTCGCCA ATCACGGCTG CGCCACCACC ACCAGCGCCG GCCGGCTGTT CGATGCGGTC GCGGGCCTGC TCGGCGTTTG CGCCGTACAA AGCTATGAAG GCCAGGCGGC CATGCAGCTC GAAGCGCTGG TGCAAATCCC GCGCGTGCTG GGCGGCGGCT GGGAGATCGG CGCCGGCACG CTCGATCTCT CGTCGCTGCT CGCCCATTTG GCGACGTCGC GGATCGATGC GCGAGACGGC GCCGAACTGT TCCATGGCAC GCTCGCGGCC GCGCTGGCTG CGTGGGCCGT GCATGCCGCG GAGCAGAGCG GACTTACTAC CATTGCACTC GGCGGCGGCT GTTTCCTCAA CCGCGTACTG AGCGAAGATC TGGCGGCGCG GCTGCGCGCG CGAGGGCTGA CGCCGTTGCT GGCGCGGCAG GTGCCGCCGA ACGATGGCGG CCTCAGCCTT GGTCAGGCCT GGATCGCCGG ACAACATCTC ACTGCCAGCA AGGAGCCGCA CTGA
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Protein sequence | MQPAAPLTAA AERARVRVRG AVQGVGFRPF VYHLAQRYRL GGFVANDADG VLIEVEGAAL PEFLVALRRE APPLARVDTI ETETVRARGD RDFGIAESRG GVVTTRIGAD AATCEACLDD LFDPASRFYL YPFVNCTHCG PRYTLTRGLP YDRANTSMAG FTMCEDCRRD YQDPHNRRFH AEPIACPRCG PQLSHPIEEI VACLRDGRIV ALKSLGGYHL LCDATSEAAV VELRRRKGRD AKPFAVMVAS EASLDRIVIA TEAERALVSS VERPIVLMRD RGALAPSVAP ALDAVGVMLP YTPLHHLIFH AAMGAPAGRE WQRAPVDLAL VATSANLGGD PIVTEDAQRR LASVADLIVS HDRDIVVRAD DSVARVIDGA PSFIRRARGF TPRPITLPGE TPPVLAVGAY LKNTITLTRG GEAFVSQHVG DLATAETVRF FEETVDHLTR LVGVKPAAIA HDLHADFAST RFAESLAAEH LGLPLIAVQH HHAHVASIAA EHGIDTPLLG LVFDGHGLGS DGGNWGGELL RVDGMRFSRL GHLKPLALPG GDAAAREPWR MAAAALHALG RDDEIASRFA DQPRAAALAA MLANHGCATT TSAGRLFDAV AGLLGVCAVQ SYEGQAAMQL EALVQIPRVL GGGWEIGAGT LDLSSLLAHL ATSRIDARDG AELFHGTLAA ALAAWAVHAA EQSGLTTIAL GGGCFLNRVL SEDLAARLRA RGLTPLLARQ VPPNDGGLSL GQAWIAGQHL TASKEPH
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