| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1047 |
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| Symbol | |
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| ID | 6408703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1116652 |
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| End bp | 1118127 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642710960 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001990077 |
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| Protein GI | 192289472 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACGA CCGGCCCTCA GGCCTCAAGC GACAATTCTG CACGAGGGAG TTCGCTGCGG
CTGGCAGCTA TGCAATCGAC TAACAGTATC GCTCCCCTGT CGCCAAGGGG GACTTTGCTG
GCGGCGCTCT TCACCACCGT TGTTCTGGCG TTCGGCGGCT GCACGCTGCT GCCGAACGGC
ACCTCAGAAG AAGAAGCCAA CCTCAATTCG GTTGCACCTG CCTATGAGCC GCCGGTCGCC
GATCGTCAGT TGCCGCTCGT GCCCGCGCCG GCGCGATGGC GCGATGTCTT GCGCCGCGCG
TTCTTTGCCA ACGGAGAGTT GGAATCCGCC TACTTCGAAT GGAAGGCCGC CTTCGCCCGC
ATCGATCAAG CCGCGACCTG GCCCAACAGC AACGTCGCCG TCAATTTCAG CTACATGTTT
TCCGCCGAGA AGCTCAAGGC GTGGGACCGC ACCACGGTCG GCGTCGGCTT CGATCCATCG
ATGAACCTGT CGCTGCCGAT CAAAGTGCAG ACCGCGGCCG AGGTTGCTCT GGAATCCGCC
AGGCAAGCCG GCGAGAAGCT TCGCGCGACA AAGTTTGAAC TGCAGCGAAA AGTCATTTCC
GCTTATCTGG ATCTGGCGCT GAGTGAGGAA AAGTTTCGGG TTCAACGCGA CAATCTGACG
CTTCTTAAGC TTGTCAACGA TTCGGCGGCC GCGCGCGCGC AATCCGGCGG CGCGCTGCAG
GACTTGCTCA AGGTTCAGAT CGAGTCTCAG ATGGCCGAGA ATGAACTGGC GAACTTGGCA
GCGGAGGCCA AGTCGATACG AGGGTCGCTG AACGGCATGC TCGCGCGCGA CGCCAATGCG
CCGCTGAGAC TGCCGTCAAC TCTGCCGTCG CAGCGAACCG TCGCCGTCGA TGACGCCCAG
CTTCTGGCGG CGGCGGTTGA ACAGAACCCG GAACTGGCCG GGCTTGCCCG GCAGGTGGCC
GGGCGAAAGG ACGCTATCGA ACTTGCAAGG CTGGCCTATC TGCCCGATTT CGTTCCCTCA
GGGACCGTGA CAGGCAATGT TTCACAGGTT GTTTCGTCGA TGGTGATGCT GCCGACAAAA
CTGCCGGCCA TCCGCGGCGC CATCAGGGAA GCGGAGGCCA TGATGCGATC GTCAGAAGCA
ATGTTGCGGC AGACCACGAG AGACCGCGCC GCCAGCTTCG TGGCAAACCT GTACTTGATG
CGAAATGCGG AGCGGCAAAT CGCCCTGTAC CGTCAGCGTA TCGTGCCGGC CGCCCAGCAA
CTGGTGAACG CGTCCCGGAG CGATTACACC GCCGGGACCG CGGCATTTTC CGATCTCATC
GACAGCCAGA GGATACTGAT CGCCGCCCGT CTTGCGGCCG CTCAGGTCCG GATCGAGCGT
GAGAAGCGAC TGGCGGAAAT TGAGGCGCTT GCGGGTGTCG ACATCGAGAC ACTTGGAACG
TCGCCACCCG GAGCGGCCTC GCTGGCCGCA CAATAG
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| Protein sequence | MSTTGPQASS DNSARGSSLR LAAMQSTNSI APLSPRGTLL AALFTTVVLA FGGCTLLPNG
TSEEEANLNS VAPAYEPPVA DRQLPLVPAP ARWRDVLRRA FFANGELESA YFEWKAAFAR
IDQAATWPNS NVAVNFSYMF SAEKLKAWDR TTVGVGFDPS MNLSLPIKVQ TAAEVALESA
RQAGEKLRAT KFELQRKVIS AYLDLALSEE KFRVQRDNLT LLKLVNDSAA ARAQSGGALQ
DLLKVQIESQ MAENELANLA AEAKSIRGSL NGMLARDANA PLRLPSTLPS QRTVAVDDAQ
LLAAAVEQNP ELAGLARQVA GRKDAIELAR LAYLPDFVPS GTVTGNVSQV VSSMVMLPTK
LPAIRGAIRE AEAMMRSSEA MLRQTTRDRA ASFVANLYLM RNAERQIALY RQRIVPAAQQ
LVNASRSDYT AGTAAFSDLI DSQRILIAAR LAAAQVRIER EKRLAEIEAL AGVDIETLGT
SPPGAASLAA Q
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