| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1029 |
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| Symbol | |
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| ID | 6408685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 1094206 |
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| End bp | 1096179 |
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| Gene Length | 1974 bp |
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| Protein Length | 657 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 642710944 |
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| Product | integrase family protein |
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| Protein accession | YP_001990061 |
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| Protein GI | 192289456 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCTTTCC ACATTTTTCG CCGCCAGGCC ACCTACTATT GGAGGCGTCG CAGGCCGCGT
CAGCTTGCCA GTTTTTGGGC CTCCTCGCAT ATTCTCGTGA GCCTGCGCAC AACCGCGTTG
CCCTCGGCAC GTCGGTTGGC GGTGGCGCTT GATGCAAAGC TTGAGGACGC AGTGATGCTC
GCCGAAAGTG CCGATCCAAC GCTATCGAAA TCCCAGATCG ATGCCATGCT TCGGACGGTC
GTGGATCGAC ATCTAACGAA GCTCGACAGG GTCGCGTTGG TCGCCAAGGG GTCCACGGGC
TTCGATCCAG ATCAGGCCCG TCGCGACGAT AAGAGAGCTT TCTGGACCTA CTCGCTCCTC
GATGCCCGTG GCCCCTACGC CGAGGTCACG GACAACGATC ATGTCCGTAT GGTCGAAGAC
GGCTTATGCG ATGCTGACAT CGAGGCGGTG AAGCGTCACC TGAAGATGTT GAAAGACAAC
GGCCTGGTCC CGACCAAACA CCATATTCTT CGGCGTTTGA TCGAGGGCGT TGCGGCCGAG
CCAACCTCTA CAAACATTCA GATTGCACAG GGTACATACT ATCGGGGAAT GAAGCTCGCG
CTTGCCGCGG CCGATAGACG CTATGGCGGT ACTCGGGCGG AGGATGCGGA CCTCGTCGAT
CGGATGTTCA CGTCCAGCGA CGCAGTTCGG CCCTGCTCGG CATTGGTCGA AGACACGTCT
CGCGAGCAAA ATAAAGTTTC GCGATCCGAG AAACAAGAAA GTCCGGCGAC GGCCTTTGCA
ATGGCGGACT TTCTGAAAAT CACCGAGAAC GTAATCGACT TGAATCGAAA AGATGATCAC
TGGGATGAAA AGACACAGCG GCAGGTTCGA AGCATTTCGC AGCTGTTCGT CAAGTTCATG
ATCCAAGATC AGCATTTGGT TGATCTAAAT TCCTTAAAGC AGATTCACGT TGGAAAGTTT
GCTGACTTCC TTCGGAGCGA GATCTACAAG CACTACGGTA AGTCTATCCG TGACAGTGAG
CTGACGATCG CGGAGCTCAG AGCCGATGGA TTGTCACGCG AGAAAGGGTT GCGCGGAATT
AGCGCCGATA CGCTCAATCG GCACTTTACA TTCTTGCGGC AAATATTCGA TCACGCGTTC
GCGCATGGCG TTGCAGATAA TCTTGAGAAG ATTGATCTCG TTAAATTGCG GGGAAGAAGC
AAGAAGCGGC GCGCTCGGGA CGAAAGAGCC AAGCTGCCGC TCAATCAGTT CGAGGTGGTC
TTTCGCGCTC CGCCGTTCAA CAATTGCGCG GCCTGGAACC GACTGGACGA GCCCGGAGTC
TTAGGGCAAC AGCAGGTTTT TCACTGCGCT TTGTACTTCG TCCCAATTCT AATTTACTAT
ACTGGTTGTC GCCGCGAAGA ACTTTGCGGG TTGATGGTGG AGGACGTTGT TCTTGATAAT
GGGCAGTATG CGTACTTGCA TATTGCGAAA AATGCTCAGC GACGCATCAA GAACCCGCAA
TCACAACGCA ATATTCCGCT GCACCCAGAG GTAATCCGTC TCAATTTCAT TGCCTATGTT
CAAGCAATCA AGTCGCTTGG CTATAGATTG CTATTTCCTG ACCTCTATTC TCCTACAACA
ACCTCCCCGA TGGGAAATCG CTTTTACAAG CAATTCAAGC CGATCTTGAT GTCGTCGGGA
GCAACAGAGG AAGGATTAGG GGCGCACGCC GTGCGTCACC TGTTTGGTGC GCAGTTAAAG
AAGAGGCTCG TTGCCGAAGA AGACCGGGCT GATTTGCTTG GTCACGGCGG GGGCACCGAG
ACCAGCGAGC GGTATTGCGA GCCTCACGAG ATCGCTACGA TGATGGAGCT TGTTCTGAAA
CTCCCCGTCA TTACCACTCA CCTGGAGCGG GCGACCATAA ACCTCCTTCC GTGGGTTGAG
CAGAAGCAAG TGGCACCATT TTCGCAGCCA TCGCGGGCGA AGCGGAGGAT CTGA
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| Protein sequence | MAFHIFRRQA TYYWRRRRPR QLASFWASSH ILVSLRTTAL PSARRLAVAL DAKLEDAVML
AESADPTLSK SQIDAMLRTV VDRHLTKLDR VALVAKGSTG FDPDQARRDD KRAFWTYSLL
DARGPYAEVT DNDHVRMVED GLCDADIEAV KRHLKMLKDN GLVPTKHHIL RRLIEGVAAE
PTSTNIQIAQ GTYYRGMKLA LAAADRRYGG TRAEDADLVD RMFTSSDAVR PCSALVEDTS
REQNKVSRSE KQESPATAFA MADFLKITEN VIDLNRKDDH WDEKTQRQVR SISQLFVKFM
IQDQHLVDLN SLKQIHVGKF ADFLRSEIYK HYGKSIRDSE LTIAELRADG LSREKGLRGI
SADTLNRHFT FLRQIFDHAF AHGVADNLEK IDLVKLRGRS KKRRARDERA KLPLNQFEVV
FRAPPFNNCA AWNRLDEPGV LGQQQVFHCA LYFVPILIYY TGCRREELCG LMVEDVVLDN
GQYAYLHIAK NAQRRIKNPQ SQRNIPLHPE VIRLNFIAYV QAIKSLGYRL LFPDLYSPTT
TSPMGNRFYK QFKPILMSSG ATEEGLGAHA VRHLFGAQLK KRLVAEEDRA DLLGHGGGTE
TSERYCEPHE IATMMELVLK LPVITTHLER ATINLLPWVE QKQVAPFSQP SRAKRRI
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