| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_1024 |
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| Symbol | |
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| ID | 6408679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 1087613 |
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| End bp | 1088542 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710938 |
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| Product | histone deacetylase superfamily |
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| Protein accession | YP_001990056 |
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| Protein GI | 192289451 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.448612 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGC TTTTTCTGAC CCATTCCGCG TGCCTCGACC ATCACACGCC GGAAGGACAT
CCTGAGCGCG CTGCGCGGCT CGTCGCCATC AACAAGACGC TCGGTGAAGA ACGCTTTGCA
CCGCTGGCGC GCGCGGAGTC GCCGATCGGC TCGCTCGAGC ACATCGCGCT GTGCCACACC
GATCACCACA TCGTCGAGCT GCGCCACATG TCGCCGTCCA CCGGCGTCGT CTATGTCGAC
GGCGACACCT CGATGTCGCC CGGCACGTTC GAAGCCGCGC TACGCGGCGT CGGCGGCTCG
GTCGCCGCGG TGGACGCGGT GATGAAAGGC GAGGCCGCCA ACGCCTTCGT GGCCACCCGC
CCACCGGGGC ACCATGCCGA AATCACCAAG CCGATGGGGT TCTGCTTCTT CGGCAATGCC
GCGATCGCCG CGCGCTACGC CCAGCGGCAA TACGGCATCG AGCGAGCCGC GGTGGTGGAT
TTCGACGTCC ACCACGGCAA CGGCACCCAG GACATCTTCT GGGGCGATCG CACCGTGATG
TATTGCTCCA CTCACCAGAT GCCGCTGTTC CCGGGTACCG GCTCCCAGGG CGAGCGCGGC
GAATATGACA ATATCGTCAA CGCGCCCCTC GCCTCCGAAG ACGGGGGCAC TGAGTTCCGG
TTCGCGTTCG AACAACTGAT CCTGCCCCAG CTCAAGCGGT TTTCGCCGGA ATTGATCGTG
ATTTCGGCCG GTTTCGACGC CCATTACCGC GATCCCCTGG CCAGCCTGAA CCTGCGCGCC
GAAGATTTCG GCTGGGTCAC CGAACGCCTG ATGGAGGTCG CGGCCCAGAC CGCCGGCGGG
CGGATTGTCT CGGTCCTCGA GGGGGGATAT GACCTCCAGG GCCTGAGTGA ATCGGTTGCG
GCTCACGTCG GCGCCCTGAT GGGCGCTTGA
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| Protein sequence | MTTLFLTHSA CLDHHTPEGH PERAARLVAI NKTLGEERFA PLARAESPIG SLEHIALCHT
DHHIVELRHM SPSTGVVYVD GDTSMSPGTF EAALRGVGGS VAAVDAVMKG EAANAFVATR
PPGHHAEITK PMGFCFFGNA AIAARYAQRQ YGIERAAVVD FDVHHGNGTQ DIFWGDRTVM
YCSTHQMPLF PGTGSQGERG EYDNIVNAPL ASEDGGTEFR FAFEQLILPQ LKRFSPELIV
ISAGFDAHYR DPLASLNLRA EDFGWVTERL MEVAAQTAGG RIVSVLEGGY DLQGLSESVA
AHVGALMGA
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