| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0933 |
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| Symbol | |
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| ID | 6408587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 992855 |
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| End bp | 994285 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642710847 |
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| Product | Homospermidine synthase |
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| Protein accession | YP_001989966 |
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| Protein GI | 192289361 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5310] Homospermidine synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTCTA CCTCGAAGAT CCATGCCAAG ATCACCGGCC CCATCGTGAT GATCGGCTTC
GGCTCGATCG GTAAGGGCGC GCTGCCCCTG ATCGAGCGTC ACTTCGAGTA CGACAAGAAG
CGGTTCGTCA TCATCGATCC GCACGAGGAT GGCGAACTCG CCAAGAAGCA CGGCGTCCGC
TTCATCAAGC AGGCGGTGAC CAAGGACAAC TACCGCGAGC TGCTGGTCCC GCTGCTGACC
GAAGGCGGCG GCCAGGGCTT CTGCGTCAAC CTGTCGGTCG ACACCGGCTC GGTCGACCTG
ATGACGATGT GCCGCGAGAT CGGTGCTCTG TATATCGACA CCGTCGTCGA GCCTTGGCTC
GGCTTCTACT TCGACAAGAA CGCCGGCCCG GAGAAGCGCT CCAACTACGC GCTGCGCGAG
ACCCTGCTGG CCGCCAAGGC CAAGAACCCG GGCGGCACCA CCGCGGTGTC GACCTGTGGT
GCCAATCCCG GCATGGTGTC GTGGTTCGTC AAGCAGGCGC TGCTCGACAT CGCCCGCGAT
ACCGGCCTCG AATTCAACGA ACCGAAGAGC CGCGAAGGCT GGGGCCAGCT CGCGCAGAAG
CTCGGCGTCA AGGGCATCCA CATTGCCGAG CGTGATACTC AGCGCGCCAA GACCCCGAAG
CCGATGAACG TGTTCGTCAA CACCTGGTCG GTGGAAGGCT TCGTGTCCGA AGGCCTGCAG
CCGGCCGAAC TCGGCTGGGG CACGCACGAG AAGTGGATCC CCGACAACGG CCGCAAGCAC
ACCGAAGGCT GCCAGGCTGC GATCTATCTG CTGCAGCCCG GTGCCAACAC CCGCGTCCGT
ACCTGGTGTC CAACTCCGGG TCCGCAGTAC GGCTTCTTGG TAACTCACAA CGAGTCGATC
TCGATCGCCG ATTACTTCAC GGTGCGCGAC GGCCAGAACG TGGTGTACCG GCCGACCTGC
CACTACGCCT ATCACCCGGC CAACGATGCG GTGCTGTCGC TGCACGAAAT GTTCGGCGCC
GAAGGCAAGA TGCAGCCGAA GTGGCACATC CTCGACGAGA ACGAGATCGT CGACGGCATC
GACGAACTCG GCGTACTGGT CTACGGCCAC GCCAAGAACG CCTACTGGTA CGGCTCGCAG
CTCTCGATCG AAGAAACCCG CGAGATCTGC CCGTATCAGA ACGCCACCGG CATGCAGGTG
TCGTCGGCGG TGCTGGCCGG CATGGTATGG GCGCTGGAGA ATCCGGAAGC CGGCATCGTC
GAAGCCGACG AGATGGACTT CCGCCGCTGC CTCGAAGTGC AGAAGCCGTA TCTCGGCCCG
GTGAAGGGCT ACTACACCGA TTGGACCCCG CTCACCGACC GCCCCGGCCT GTTCCCGGAG
GACATCGACA CCTCCGATCC GTGGCAGTTC AAGAACGTCC TGGTGCGCTG A
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| Protein sequence | MSSTSKIHAK ITGPIVMIGF GSIGKGALPL IERHFEYDKK RFVIIDPHED GELAKKHGVR
FIKQAVTKDN YRELLVPLLT EGGGQGFCVN LSVDTGSVDL MTMCREIGAL YIDTVVEPWL
GFYFDKNAGP EKRSNYALRE TLLAAKAKNP GGTTAVSTCG ANPGMVSWFV KQALLDIARD
TGLEFNEPKS REGWGQLAQK LGVKGIHIAE RDTQRAKTPK PMNVFVNTWS VEGFVSEGLQ
PAELGWGTHE KWIPDNGRKH TEGCQAAIYL LQPGANTRVR TWCPTPGPQY GFLVTHNESI
SIADYFTVRD GQNVVYRPTC HYAYHPANDA VLSLHEMFGA EGKMQPKWHI LDENEIVDGI
DELGVLVYGH AKNAYWYGSQ LSIEETREIC PYQNATGMQV SSAVLAGMVW ALENPEAGIV
EADEMDFRRC LEVQKPYLGP VKGYYTDWTP LTDRPGLFPE DIDTSDPWQF KNVLVR
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