| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0685 |
|---|
| Symbol | |
|---|
| ID | 6408338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 720891 |
|---|
| End bp | 721829 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642710600 |
|---|
| Product | Baseplate J family protein |
|---|
| Protein accession | YP_001989720 |
|---|
| Protein GI | 192289115 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3948] Phage-related baseplate assembly protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG CCGCATCGCT CGACCTGTCG CGCATCGGCG CGCCGACGCT GGTCAATATC
GACTACGAGG CGGCGCTGAC GGCGCGCCTG CGGAATTTCC GATCTCTGTG GGATGCGGCG
CGCGCGAAGG ACCCGACGCT GCCGTTGTTC GACGTGATCG ACGCGGACGG CAACCCGCTC
ACGCAGTTCG ACGCCAACGT CGTGCTCGAG CAAGAGTTCG CGTTCGGCGA GACCGAGATC
GGGCAAGCGA TCAACGATCA CGCCAACGCG CTGCGGCTCG CGACTGCGGT GAGCGCCGAC
CTCGACCATC TGGCCGTCAC CTACAAGGCC ACCTCGCGCC TGGTGCTGGC GCCGGCCACG
GACACCACGC CGGAGGTGCT GGAAAGCGAA GCGGAACTGC GCGAGCGTGC GCAGATGTCC
GACGAAGCCC GGCCGCTGTT CGGACTCACA CCGCCCGGTT ACGCCTGGCG CGTCCGCAAG
CTGTTCGGCG ATCGCGTCAA GGACGTGCGA CCGCTGCGCC GGCCGGGTGG CCACATGGAT
CTGATGATCC TCGGCCGGGA AGGTGACGGC TCGCCGGCCG AGACGCTGAT CGGCGACATC
CAGGCGGCGT TCGAAGGCGA AGCCGGCTCG CACTCCACCG ACATCGTGAC GGCGCGGCCG
GCGCGGATCG TGGCAACTCC GGTCGCGGTC AAGCTGTGGG TGTCGCGCGG GCCAGATCCG
GCGCTGGCGG TCGCGCTCGC CACCACGGCG ATCGCCGCGC TCGGCTCCGA GCGCCACCGG
ATTGGCGAAA CGCTGCACGC GCAGGCGATC GGCGCGGTCG CGAAGTCGGG CGTGGTGCGG
AATGTCGATG TGCTGGCGCC GCTCGCCGAT ATCCAAGGCG GAGAAGACGG CGCGCCGTTC
ATTTCGTCGA TCGCTGTGAG TTGGGGGATT GACGGATGA
|
|---|
| Protein sequence | MSTAASLDLS RIGAPTLVNI DYEAALTARL RNFRSLWDAA RAKDPTLPLF DVIDADGNPL
TQFDANVVLE QEFAFGETEI GQAINDHANA LRLATAVSAD LDHLAVTYKA TSRLVLAPAT
DTTPEVLESE AELRERAQMS DEARPLFGLT PPGYAWRVRK LFGDRVKDVR PLRRPGGHMD
LMILGREGDG SPAETLIGDI QAAFEGEAGS HSTDIVTARP ARIVATPVAV KLWVSRGPDP
ALAVALATTA IAALGSERHR IGETLHAQAI GAVAKSGVVR NVDVLAPLAD IQGGEDGAPF
ISSIAVSWGI DG
|
|---|
| |