| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0673 |
|---|
| Symbol | |
|---|
| ID | 6408325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 714647 |
|---|
| End bp | 715609 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642710587 |
|---|
| Product | putative prophage MuSo2 protein |
|---|
| Protein accession | YP_001989708 |
|---|
| Protein GI | 192289103 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4388] Mu-like prophage I protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.485399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGACGC TTGCCGTCGA TCCGACGCTC TCCGCGGAGG GCGATTGGCC GCGCTGGGTG
CAGGTGACGC CGCGCGGCGA AGTGCAGGTG CGCGATGGAC GCCGCTTCAC CTTTGAACCG
GAGCGCCTCG TTGCGCGCTT CAAGGCCGAC GCTGTGGATG TGCCGGCGGA TCTCGATCAC
GCGATCTCGC TGAAAGCAAA GAACGGCGAT CGCGCCGACG CGGTTGGTTG GATTTCTCAG
CTCGAAGCGC GACCCAACGG AACGTGGGCG CTTGTCGACA TGCTCGACGC CGGCAAGGAA
GCGCTCGCGA AGAAAACGCA CCGCTACATT TCGCCGACCT TCCACCACAC CGCCGGTCTC
GCGACCTGGC TGCATTCGAT CGCGCTCGTC GCCGCGCCCG CGCTGGCGAT GCCGGCGATC
GCCTCGGCCT CTCTCACCAC CCCTCAGGAG CCCCACATGC CGAACGAAAT CGCGAAGGCG
CTCGGCCTCG CGGAAACCGC TGACGAGGCC GCGTGCCTGT CGGCGATCAC TACGCTGACG
ACCGGTACGG TCGCCAAGGC GGTGCACGAC CAGGCGCTGG CTAACCTTGC CGCCGCCACC
GGCCGCGTCG CCGAGCTGGA GGCGCAGATC GCGACCCGCG ACAAGGCCGA TCACGAGGCG
AAGGTCACGG CGACGCTCGA TGCCGCGCTC AAGGCCAAGA AGATCGTGCC GGCGCAGCGC
GACAAGTACG CGTCCCTCTG CGCCACGCCC GCCGGTCTGG CGGAAGTGCA GGCACTGCTC
GACGTTACGC CGGCGACGCT GCAGAGCTCC GGTCTCGACG ATCGGGCCGC CGACACCGGC
GATGTCGCGC AGCCTGTCGA TCTGCTCGCG AAGGCGAATG CCGAGATCGA GAAGGCTCAG
AAAGTGGGTA TCGAGCTTTC GCTTGCTGAC GCCATCGTCA AGGTCAACCA GGGGATCGCC
TGA
|
|---|
| Protein sequence | MTTLAVDPTL SAEGDWPRWV QVTPRGEVQV RDGRRFTFEP ERLVARFKAD AVDVPADLDH
AISLKAKNGD RADAVGWISQ LEARPNGTWA LVDMLDAGKE ALAKKTHRYI SPTFHHTAGL
ATWLHSIALV AAPALAMPAI ASASLTTPQE PHMPNEIAKA LGLAETADEA ACLSAITTLT
TGTVAKAVHD QALANLAAAT GRVAELEAQI ATRDKADHEA KVTATLDAAL KAKKIVPAQR
DKYASLCATP AGLAEVQALL DVTPATLQSS GLDDRAADTG DVAQPVDLLA KANAEIEKAQ
KVGIELSLAD AIVKVNQGIA
|
|---|
| |