Gene Rpal_0646 details

Gene Information

• Locus tag: Rpal_0646
• ID: 6408298
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 696999
• End bp: 699173
• Gene Length: 2175 bp
• Protein Length: 724 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 642710560
• Product: Integrase catalytic region
• Protein accession: YP_001989681
• Protein GI: 192289076

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGAAT GGTGCACCGC GCGCGAGCTG GCAGAGGCGC AGCTACCAGG ATTGCCTTCC 
ACTGAGAGCG CGCTGATCCG CTTTGCGGGT CGCGAAGGCT GGAACGACAG TCTGGCCTAT 
GTCCGGCGCC GCTCCGGCCG CGGTGGTGGA CTGGAATACA ACATCTCGCT GTTGCCGCCC 
TCGGCGCGCG TCGAGTTTGA GCGCCGGCAT CGCGCCATTC TGGCGCCGCA GCCGGTCGAA 
GCCTCGACTG CAGCGCAGCC GGCCGAAAAC CTCAGTGAGC GCGCCGCCAA AGAGCGTGAT 
GCGCGCCTCG CCATCGTTGC CGCCTTCGCC GCTTTCGGCC GCGGCCAGCG GCTCGGTAAC 
GCATCCCGCT CGAAGATCTT CGTGGACGCC TATAACGGCG GCACGCTGAT CATCGACGCC 
TGGATTCGCG AGATCATTCC GCATCTGTCG CCCCGATCGC TGGCGCGCTG GGTCAAGGCG 
AAGCGCGAGG GCCGCACGAA CAACCTAGCT GTCGACCGTG CCAAGGCCCG CAAGGGCAAA 
GGCGTGCTCG ACATCGCCTG CGACGGCAAG GTCCGCACCT ATCTGCTGGC GCTGATCGCT 
CACAACCCGC ATTTGTCGGC CCAGCACCTT CGCGCGCTGA TCCGCTCCGA GTTCGGCGAC 
CAGTTGGTGA TGCCGAGCGG CGAAGTGGTC GAAGTGCCGC CGGTCCGGAC GCTTCAGCAC 
TACGTGGCGA AGCTGAAGGA CGAAGAGCGG GTTGCACTCA CCAAGCTGTC GAACCCCGAT 
CGCTACCGCT CGACCATGGC GCCTTCCGGT GTCGGAACCT ATCGCTGGGT CAGGGAGCCG 
AACACGCTTT GGATGATCGA CGCATCGCCG GTTGACGCGC TGTGCGTCGA TGGCCGCCAC 
TCGATCTACG CGGCGATCGA CATCGCGACG CGGCGAACGA AGCTGTACGT CTCGCGCACG 
CCGCGCGCCT CCGCCGTGGC GCTGCTGATG CGCAAGGCGA TCATCGCCTG GGGTGTGCCG 
GAGACCGTCA AGACCGATAA CGGCTCAGAC TTTGTCGCTC AGGATACGCA GCGGCTGTTC 
GCGAACCTCG GGATCGAGCC AGAGCTGTCG GACAAGTACT CGCCGGCGCA GAAAGGTCAC 
GTTGAACGGG TAATCAAGAC ATTCCAGCAC GACTGCGCCA CACTGCTGCC CGGCTTCGTC 
GGCCACAACG TCGCCGACCG CAAGCGGATC GAGGATCGCA AGGGCTTCGC CGCCCGGCTC 
GGCGAAGACA CCGCCGAAAC CTTCGGCGTG TCGCTCACCG GCGCGCAGCT CCAGGCCTAT 
GTCGATCAGT GGATCGACTT GGTCTACGAG CAGCGGACGC ATTCGGCCCT CGGCACTTCG 
CCGATGCTGG CCGCTGCCGC GTCGAAGAAG CCGATCAAGA CCGTCGATCC CCACGCGCTC 
GACCTGCTGC TGATGCCGGT CGGCGGCATT CGTGTGGTCA CTAAGTTCGG CATCCAGCTC 
GATCGCTTCA AATACGTCAT CAACGAAGCG CTCCCCGGCG ATCGGGTGCT GGTCCGCCAA 
GACCCGAACG ATGCTGGCCG CATCATCGCT TTCGATGCCG ACAGCGGCGC CTATGTCGGC 
GACGGCATCT GCCCGGAGTT GGCCGGCGTC GACCCGGCCG CGCTGCTGCG CGCCAAGAAG 
GAATTCACGG CTGCGCATCT GGCCGAACGC ACCCGCGACG TGCGTCGCGA GATCAAGAAG 
CTCACCACCG GGCCGGCCCT GATCGAGCGC ATGCTCGAGG TCGCCCGTCG CGACATGCCG 
AACGTGATCT CGCTGCCCAA GCGCGAAGAG AAACACGAGA CGCCAGCGAT CGCCGCGGCG 
CTCGACGCCA TGGTGCCGAA GGAAGCGCCC CCACCATCGT CCGACGTGCT CGCGATGCAG 
GCGAAGCTGA TCGCCGACGA AACCGTGGTG CCGCTGCGCT CCGAAGAGAC CCCGCATCAA 
CGCTGGCAGC GCGCGCTCGA TGTCATCGCT CGCATGCAGG CCGGCGATCC CGTCACCTCC 
GAAGAGGCGA TGTGGCTGGG CGGCTATCGC ACCGGCCCTG AGTATCAGGC CCGCGCTCTG 
ATGCACGGCG ACCCGATGGA AACAGAAAAA CCCGCCGCGT CCTGGACCGA CGCGACGGGT 
CAGCAATCAC TGTGA 

 

Protein sequence

MKEWCTAREL AEAQLPGLPS TESALIRFAG REGWNDSLAY VRRRSGRGGG LEYNISLLPP 
SARVEFERRH RAILAPQPVE ASTAAQPAEN LSERAAKERD ARLAIVAAFA AFGRGQRLGN 
ASRSKIFVDA YNGGTLIIDA WIREIIPHLS PRSLARWVKA KREGRTNNLA VDRAKARKGK 
GVLDIACDGK VRTYLLALIA HNPHLSAQHL RALIRSEFGD QLVMPSGEVV EVPPVRTLQH 
YVAKLKDEER VALTKLSNPD RYRSTMAPSG VGTYRWVREP NTLWMIDASP VDALCVDGRH 
SIYAAIDIAT RRTKLYVSRT PRASAVALLM RKAIIAWGVP ETVKTDNGSD FVAQDTQRLF 
ANLGIEPELS DKYSPAQKGH VERVIKTFQH DCATLLPGFV GHNVADRKRI EDRKGFAARL 
GEDTAETFGV SLTGAQLQAY VDQWIDLVYE QRTHSALGTS PMLAAAASKK PIKTVDPHAL 
DLLLMPVGGI RVVTKFGIQL DRFKYVINEA LPGDRVLVRQ DPNDAGRIIA FDADSGAYVG 
DGICPELAGV DPAALLRAKK EFTAAHLAER TRDVRREIKK LTTGPALIER MLEVARRDMP 
NVISLPKREE KHETPAIAAA LDAMVPKEAP PPSSDVLAMQ AKLIADETVV PLRSEETPHQ 
RWQRALDVIA RMQAGDPVTS EEAMWLGGYR TGPEYQARAL MHGDPMETEK PAASWTDATG 
QQSL