| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0553 |
|---|
| Symbol | |
|---|
| ID | 6408203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 602619 |
|---|
| End bp | 603500 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710466 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001989588 |
|---|
| Protein GI | 192288983 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCC GCCATCTCCG CTATTTCGCC GCCGTCGCGC GGCACCTGAA CTTCACGGCA
GCCGCCGAGA GCCTCGGCGT CGCCCAGCCT CCGCTCAGTC AGCAAATCAG GGACCTGGAA
GCCGAGATCG GCACCCCGCT GTTCGAGCGG ACGACCCGGC GTGTGGCGCT GACCCGCGCC
GGCGAGGATT TCCTGAAGCA GGCGCTCGCC ATTCTGGAGC GGGCCGACAA TGCCGTTCAG
CGCGCCCGCT CGATCGGCGC AGGCACCGCC GGCATCCTCA ATGTCGGGCT GACCGGATCA
GTGCTGACCG GCCCGCTCGG ACGAGCGATC CAGCAGTTTG CGCTCAACTA TCCGAACGTC
GATCTCCGCA TCCACGAGAT GTCGCCCGAC CGCCAGGTTG CGGCGCTGAA ATCCGGCCAG
ACCGATGTGA GCTTCCTGCG CTGTCCGCCG CAGGATGCCG AGATCGCCAG CGAACTGGCG
TGGCGGGAAT CGGTCCGGCT GGTCCTGCCG AAAGGCCATG CGCTATCGGC CAGGAAGGTG
ACCCTGGCGG ATCTCCGGGA CGAGAGCTTC GTGTTTCTGC GGCTGGAGGA CTCGCTGTTT
GCGAAATACT TATGGCAGTG CTGTTTCGAG GCGGGCTACG CGCCGCGCGT CACCCATCAG
GCGATCGAGT CGACCTCGCT GACGAGTCTG GTCGCAGCAG GTCTCGGCGT CGCCATCATC
CCGGAATTCG TCAGCAAGCT GGCCCACCCC GACGTGGTGT ATCGGCCGAT CGCCGGACCG
CCGATTTCGG CCGACGTTCA CGCACTGACG ACCGCCGCCA ACAACCCGCT CGCGAGTCAG
TTCATCGCAC TGGTGCAGAC GCTGTCCGGC AAGGCGAGCT GA
|
|---|
| Protein sequence | MEIRHLRYFA AVARHLNFTA AAESLGVAQP PLSQQIRDLE AEIGTPLFER TTRRVALTRA
GEDFLKQALA ILERADNAVQ RARSIGAGTA GILNVGLTGS VLTGPLGRAI QQFALNYPNV
DLRIHEMSPD RQVAALKSGQ TDVSFLRCPP QDAEIASELA WRESVRLVLP KGHALSARKV
TLADLRDESF VFLRLEDSLF AKYLWQCCFE AGYAPRVTHQ AIESTSLTSL VAAGLGVAII
PEFVSKLAHP DVVYRPIAGP PISADVHALT TAANNPLASQ FIALVQTLSG KAS
|
|---|
| |