| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0403 |
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| Symbol | |
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| ID | 6408050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 431221 |
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| End bp | 432057 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642710314 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001989439 |
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| Protein GI | 192288834 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.19413 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTCGAGG CTGGACTGCT CGCGAACAGA CGGATTCTGA TTACCGGCGG CGGTTCCGGA
CTCGGCGCCG CGATGGCGGC ACGCTTTGCC GAACTCGGTG CGTCGCTGGT GCTGTGCGGG
CGGCGTGCCG AGGTGCTGCA AGAGACCGCG GAGCAACTTC GGTCACACGG CAGCCAAGTC
GACACCATCG TTTGCGACGT GCGCGATCCG CAAGCGGTCG AAGCCATGCT CGACGAGATC
TGGCGCGTTG CGCCGCTCGA CGTACTGGTC AACAACGCCG CTGCGACCTT CATCGCACAG
ACCGAACGCC TGTCGGCGCG TGCCGCCGAC GCGATCCTGG CGCCGACGCT GCACGGCGCG
ATGTACTGCA CGCTCGGCGC CGGCCGGCGC TGGATCGACG GCGAACATGC GGGCGTCGTG
CTCAGCATCC TGTCGACCTC GACGATCACC GGCCGCGCCT TTACAGTGCC GTCCGCAATG
GCCAAGTCGG CGGTGCTGGC GATGACCAAG AGCCTCGCGG TCGAATGGGG ACCGAAGCAG
ATCCGGTTGG TGGCCATCGC GCCGGGTGCA TTTCCGACCG CGGGTGCGAC CGCGCAGCTG
AGGCCCGACG GCCGCTCCGC CGATCCGGCG GACCGGGTGC CACTCGGCCG CGTCGGTCGC
CACGCCGAAC TCGCCAATCT CGCCAGCTTC CTGATCTCCG ATCAGGCCGG CTACATCACC
GGCGAGATGG TGGTGCAGGA CGGCGGTACC CATCTGCGCA GCTCCGGCGC CGAAGACCTG
CTGCAATGGA ACGATCAGCA ATGGTCCGCG CATCGGGCCG GGCGCGCCAA ATCCTGA
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| Protein sequence | MFEAGLLANR RILITGGGSG LGAAMAARFA ELGASLVLCG RRAEVLQETA EQLRSHGSQV
DTIVCDVRDP QAVEAMLDEI WRVAPLDVLV NNAAATFIAQ TERLSARAAD AILAPTLHGA
MYCTLGAGRR WIDGEHAGVV LSILSTSTIT GRAFTVPSAM AKSAVLAMTK SLAVEWGPKQ
IRLVAIAPGA FPTAGATAQL RPDGRSADPA DRVPLGRVGR HAELANLASF LISDQAGYIT
GEMVVQDGGT HLRSSGAEDL LQWNDQQWSA HRAGRAKS
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