| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0319 |
|---|
| Symbol | |
|---|
| ID | 6407965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 338482 |
|---|
| End bp | 340392 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642710229 |
|---|
| Product | integral membrane sensor hybrid histidine kinase |
|---|
| Protein accession | YP_001989355 |
|---|
| Protein GI | 192288750 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGCA AGCTGCGGAT CAGGTCGAGG CTGCGTCTGT TGGCGCGCCG GCATCCGCGC
ATCACGATGG CGGGCCGCGC CGTGATGGCG TTTTCCGCCG GGTTCGGCGG TGCTTATGGA
CTGCTGCTCG GCAGCAACCC GGAGACCTCC GGCTACGATC CGCACGCCTT CGCCGTTGGC
GCCAGTTTCC TGTTCGCGCT GGCCTGCTTG GCGCTTGCGG TGCAAACGAT GCGGCTGCGG
CGAATGAGGG GCCGCCTGCG CCTGCTGACT GCGTCTCAGG AACCACCTCC GGATCTGCAG
CCAAATCAAA GCAAGACACG CGCGCTGATC GCGGCGCGCG AGAGCGCCGA CGCCGCGAAC
CACGCCAAGT CGCGGTTGCT GGCAATGGCG TCGCACGAAA TCCGCACCCC ACTGAACGGC
ATCATCGGCA TGAGCCGCCT GTTGCTCGAT ACGCCGCTCA GCGCCGAACA GGCGACTTAC
GCCAAGGCGG TGAAAACATC CGGCGAGGCG CTGCTGGCGT TGACGGACGA GTTGCTCGAC
TACGCGCGGA TCGAGGCTGG CAAGATCGAG CTCGATTGCC GGCCCTTCGT ATTGAGCAGT
CTGATCGAAG ACATCATCGA ATTGCTGGCG CCGCGGGCGC AGGCGCGCGG ACTCGAGATT
GCGGCCGATA TCGACGAGCG GCTACCGGTA AGCCTGATTG GCGATGCCGC ACGGTTGCGT
CAGGTGCTGC TCAATCTCTG CGGCAACGCC ATCAAATTCA CTGAAACTGG CGGCGTCGCT
CTGATCGTCG AGCGAGGCGA CCAGAGCGAC GGACTCCGCA TCATCGTCCG TGACACCGGC
ATCGGCATTG CGCCCGACGC GCAGGCACGA ATCTTCCACG AGTTCGAACA GGCCGACGCC
GGGATCGCCC GCAATTTCGG CGGCACCGGT CTCGGCCTCA GCATCAGCGA CCGCATCGTC
TCGGTGATGG GTGGCCGGAT CGCGCTCGAG AGTAAACCTG GGGAAGGCTC GACCTTCACC
ATCACGCTAC CGCTGAGCGC CGCCGACCAC GATCGCGCAA CCGCGGCATT TGCACCGCCG
GATCTGCATG GCAGCTCGGT GATGATCGTC TCGCCGCACG GGGTCGAAGC TTCGCTGGCC
GCCCGGCGGT TGGAGCGCTG GGGCGCCGAG ACCTGCCTGT GTGATGATCT CGCCGCGGCG
ATCGCCCGGC TGCCGGAGCG AAGCTGGCAC GCGGTGCTGA TCGATCATGC GTTCGGTACG
GACACGATTG AGACCTTGGC GCGCAAGGCT CTGCCGCGTG CGACCCATCG CCTGGTGATG
CTGACGCCGG CGGCACGGCA CGAGCTGCTG CCGGATCTGC CCGCCGCGTT CACAGGCTAT
CTGGTGAAGC CGCTGCGGGC CGCGTCGCTT GCCGCACGGC TCGGCACGGC GGTCGAGGTC
GCCGCGCCAA GTATCGCAGA CGGCGATCCG CCGCCCGTTC AGGATGCGTC CTCAGCCATC
ACGCATGAAG CGTTCGCAAT CCTGGTCGCC GAAGATAACG ACATCAATGC GCTGCTGATT
CGCGCACTAC TGCACCGGCT TGGCCATCAC GCCGAGATCG TGGGTGACGG CCGCCGTGCC
GTCGAAGCGT GGGGCGCGGC TGATAACACC GGTACGCCGT TCGATCTGGT GCTGATGGAC
GTGCAGATGC CAATCCTCGA TGGGCTGGCG GCGGCCCGAC AGATCAGGAC GCTCGAGGCT
GAGCGGGCGA GGTCGCGGGT GCCGATCCTG GCGCTGACCG CGAACACTCT GGCCGAGGAT
CGCGAGGCAT GTTTGGAGTC CGGAATGGAC GGATTCCTGG TCAAGCCGAT CGATCCGGAT
AGGCTCGCAG CGATCCTGGC GGGCGTGGCC GCCGTGCACC AAACCGCCTG A
|
|---|
| Protein sequence | MAGKLRIRSR LRLLARRHPR ITMAGRAVMA FSAGFGGAYG LLLGSNPETS GYDPHAFAVG
ASFLFALACL ALAVQTMRLR RMRGRLRLLT ASQEPPPDLQ PNQSKTRALI AARESADAAN
HAKSRLLAMA SHEIRTPLNG IIGMSRLLLD TPLSAEQATY AKAVKTSGEA LLALTDELLD
YARIEAGKIE LDCRPFVLSS LIEDIIELLA PRAQARGLEI AADIDERLPV SLIGDAARLR
QVLLNLCGNA IKFTETGGVA LIVERGDQSD GLRIIVRDTG IGIAPDAQAR IFHEFEQADA
GIARNFGGTG LGLSISDRIV SVMGGRIALE SKPGEGSTFT ITLPLSAADH DRATAAFAPP
DLHGSSVMIV SPHGVEASLA ARRLERWGAE TCLCDDLAAA IARLPERSWH AVLIDHAFGT
DTIETLARKA LPRATHRLVM LTPAARHELL PDLPAAFTGY LVKPLRAASL AARLGTAVEV
AAPSIADGDP PPVQDASSAI THEAFAILVA EDNDINALLI RALLHRLGHH AEIVGDGRRA
VEAWGAADNT GTPFDLVLMD VQMPILDGLA AARQIRTLEA ERARSRVPIL ALTANTLAED
REACLESGMD GFLVKPIDPD RLAAILAGVA AVHQTA
|
|---|
| |