Gene Rpal_0244 details

Gene Information

• Locus tag: Rpal_0244
• Symbol: rimM
• ID: 6407888
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 260621
• End bp: 261151
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642710152
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001989280
• Protein GI: 192288675
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTCCG GGCTCATTTG CGTCGCCCGG ATCGGCGCGC CGCATGGCGT GCGCGGTGCG 
GTGCGGCTGT GGAGCTTCAC CGCCGACCCG TTCGCCGTCA GCGACTACGG TCCGCTTGTG 
ACCAAGGACG GCGCGCGCCA GTTCGAAATC GCGAGCGCGC GCGAGGCCAA GAGCCATCTG 
GTGGTGACGC TGAAGGGCGT CGCCACGCGC GATGAGGCCG AACGGCTCAA CGGCGTCGAG 
CTCTATGTGG CACGCGACAA GCTGCCGCCG ACCGAGGCCG ACGAGTACTA CCACGCCGAC 
CTGATCGGGC TCGCCGCCGT CACCACGGCT GGCGACGCGC TCGGCAAGGT GGTGGCGATC 
CACAATTTCG GCGCCGGCGA TATCATCGAA ATCGCGCCGC CGTCAGGTCC GACGCTGCTG 
CTGCCATTCA CCAATGCGGT GGTGCCGACT GTCGATCTCG CTGCCGGCCA GGTGGTGATC 
GAACTGCCGA ACGAGATCGA AGGCGACACG CCGAACCATC CGGAGGCGTG A 

 

Protein sequence

MPSGLICVAR IGAPHGVRGA VRLWSFTADP FAVSDYGPLV TKDGARQFEI ASAREAKSHL 
VVTLKGVATR DEAERLNGVE LYVARDKLPP TEADEYYHAD LIGLAAVTTA GDALGKVVAI 
HNFGAGDIIE IAPPSGPTLL LPFTNAVVPT VDLAAGQVVI ELPNEIEGDT PNHPEA