| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0113 |
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| Symbol | |
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| ID | 6407756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 125453 |
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| End bp | 126241 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710022 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001989151 |
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| Protein GI | 192288546 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.351696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTCA ACGGCAAGGT CGCTGTCGTC ACGGCAGCAG CATCGGGCAT TGGCGCCGCC
ACGGCCGCCC GTCTCGCGCG GGAAGGCGCG TATGTCTATC TCTCGGATAT TGATCAGGAC
GCTCTGGGCC GACAGGCCGA ATCTTTGGTC GACGTCGCTG AGCGGATTTC GACGGTGGTG
GCTGATGTCA CCGTACCCGA GCAGGTCTCG GCGCTAATTG ACGGAGCCGC GCGCGAGCGG
GGCCGGCTCG ATATCCTGAT CAACAATGCC GGCATGGGCG CGTTCGGCCG CATCACCGAG
GTGACGCCGG AAGCCTGGCA CCGCGTCTTC GGGATCTGCG TGGATTCGAT CTTTCACGCA
AGTCGCGCCG CGATCCCGCA TCTAATCAAG GCCCGCGGCA CTATCGTCAA CACCGCTTCT
ATCTCCGGTC TGTTCGGCGA CTACGGCTTC GCTGCCTACA ACGCCGCGAA GGGCGCGGTG
ATCAATCTCA CCCGCAACAT GGCGCTCGAC TACAGCCGCG ACGGCCTTCG CGTGAACGCG
GTCTGCCCCG GCCTCATCGC GACGCCGCTG TCGCTGAAGC TGCGCGACAA CGCAGCGGTG
ATGGCCGAGT ACGACCGGCT GATCCCGCTC GGCCGCGCCG GTTCGCCCGA AGAGGTCGCT
GGCGCGATCG CTTTCCTCGC GTCCGACGAT GCGTCCTACA TCACCGGCGT CGCCTTCGCG
GTCGATGGCG GGCTGACTGC CCGAACCGGG CAGCCGAACT TCCTCGGGCA CCTGGCGCCC
AAGCCCTGA
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| Protein sequence | MRFNGKVAVV TAAASGIGAA TAARLAREGA YVYLSDIDQD ALGRQAESLV DVAERISTVV
ADVTVPEQVS ALIDGAARER GRLDILINNA GMGAFGRITE VTPEAWHRVF GICVDSIFHA
SRAAIPHLIK ARGTIVNTAS ISGLFGDYGF AAYNAAKGAV INLTRNMALD YSRDGLRVNA
VCPGLIATPL SLKLRDNAAV MAEYDRLIPL GRAGSPEEVA GAIAFLASDD ASYITGVAFA
VDGGLTARTG QPNFLGHLAP KP
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