Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_0109 |
Symbol | |
ID | 6407752 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 119809 |
End bp | 121350 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642710018 |
Product | transcriptional regulator, GntR family with aminotransferase domain |
Protein accession | YP_001989147 |
Protein GI | 192288542 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.290721 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGCACGCA CGCCTAATGG CGGTGCAATT GCCTGCTCAG ATGCCGCCGC ATTAGGCAAA GACGAGTTGT TCTGGGGCGC GTTGTTTCGC GGCCTCAACC GCGGCGGCTC TTTCCTGCAA TTGCAGATTC GCCAGATCAT CGTGACGGCG ATCGAGGATG GCCGCCTACC GCTCGGCATG AAGATGCCGT CCAGCCGCGA TCTCGCCACC GTGCTGAAGG TGTCACGTAA CACCGTGGTG ATCGCTTACG AGCAGCTCGT CGATCAGAAC TTTCTGGTTT CGCGGCAGCG CAGCGGTTAC TTCGTCGCCG GCCTGCCGAA GAAATTCGCC ACCGAAGCGC CCGGCCTCGC CGAGGTCACC AGCCGCGGCG ACGAACACTG GGTCGATCGC TTCGCGGTGA GGCCGTCGGC GCATCGCAAC ATCGTCAAGC CGCTCGACTG GCAGACGCAT CCCTACCCGT TCATCTTCGG CCAGTTCGAT CCGAGTCTGT TTCCGACCAA CGACTGGCGC GAAAGCGCCC GCGCCGCGCT CAGCGTTCCG GAAATCAACA ACTGGGCCCG CGACCTGATC GACGGCGATG ATCCGGCGCT GATCGAGCAG TTACAGCTTC AGGTGCTGCC GCGCCGTGGC ATCCACGCCC GAGCCGACGA GATCATGATG ACGATCGGTG CTCAGCACGC GCTGTATCTG ATCGCGACGC TGTTCATTAA CGGCCAGACC AAGGTCGGCA TCGAAGAGCC GGGCTATCCG GACGCCCGCA ACATCTTCCG GATGCTGACG CCCAACGTGG TGCCGCTTTC CGTCGACAGC GAAGGGCTGG TGCCGGACGC GATGTTCCAG AGCTGCGCGC TGGCTTATGT CACCGCCAGC CATCAGTGCC CTACCGCCGT GACAATGCCG CTGCCTCGCC GCATCGAGCT GTTGAAAGCC GCTGCGACCG GCGACGTGGT CGTGGTGGAG GACGATTACG AAGGCGAATT GATGCCGGAA TCGGCGACGC TGCCGCCGCT GAAGAGTATC GATCGCGCCA GCAACGTCCT CTATGTCGGC AGCCTGTCGA AGGCGCTGGC ACCGGGCCTG CGGCTCGGTT ACGTCGTCGC TCCCGCCCCG GTGATCCGCG AATTGCGCGC CCTGCGTCGG CTGATGCTTC GGCATCCGCC GCTCAACAAT CAGCGCGTCG CCGCGCTGTT CATCGGCCTC GGCCACTATC GGGCACATCT CGCCCAAGTC GGCCGCGTGC TGCTTGAACG CGCCAAACTG CTCGACCAGT TGCTACCGAA GCATCTGCCG AGTTGCAGTT TTTCGCGCGG TCCGGGCTCG ACCAATTTCT GGGTGACCTG CCCGACTTCG ATCGACGCGA CCGCTCTGGC CCAGGCGGCG CTCGAACAGG GCGTCGTGAT CGAACCCGGC GCTGTGTTCT CGATGGACGA AACCGCGAGC CGGCACTGCT TCCGACTCGG TTTCTCGTCG ATCCGCACGG ACCGGATCGA GGTTGGCATC CAGCGCCTCG GCGAAGTTAT CGCCCAGCAT CTGAAGGCCT AG
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Protein sequence | MARTPNGGAI ACSDAAALGK DELFWGALFR GLNRGGSFLQ LQIRQIIVTA IEDGRLPLGM KMPSSRDLAT VLKVSRNTVV IAYEQLVDQN FLVSRQRSGY FVAGLPKKFA TEAPGLAEVT SRGDEHWVDR FAVRPSAHRN IVKPLDWQTH PYPFIFGQFD PSLFPTNDWR ESARAALSVP EINNWARDLI DGDDPALIEQ LQLQVLPRRG IHARADEIMM TIGAQHALYL IATLFINGQT KVGIEEPGYP DARNIFRMLT PNVVPLSVDS EGLVPDAMFQ SCALAYVTAS HQCPTAVTMP LPRRIELLKA AATGDVVVVE DDYEGELMPE SATLPPLKSI DRASNVLYVG SLSKALAPGL RLGYVVAPAP VIRELRALRR LMLRHPPLNN QRVAALFIGL GHYRAHLAQV GRVLLERAKL LDQLLPKHLP SCSFSRGPGS TNFWVTCPTS IDATALAQAA LEQGVVIEPG AVFSMDETAS RHCFRLGFSS IRTDRIEVGI QRLGEVIAQH LKA
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