| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0105 |
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| Symbol | |
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| ID | 6407748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 114274 |
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| End bp | 115254 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642710014 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001989143 |
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| Protein GI | 192288538 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.109225 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCTCC TCACCCATCT GTTCGGAAAA CTCGCCAACG CCGTCGCGCT GCTGCTGGCG
GTGCTGGTGA TGAATTTCTG CCTGATCCAT CTTGCGCCGG GCGACCCGGT GCAGGTGATC
GCCGGCGAGA TGGGTGGGGC GTCGCCCGAG GTGATCGCGG CGCTGCGGGC AAAATACGGC
CTCGACCACA GCCTGCTCGA ACAGATGTTC ACTTATCTGG GCAAGGTGGC GCATGGCGAC
TTCGGCTATT CCTACTACTT CAACCAGCCG GTGCTCGGCC TGATCCTGCA GCGGCTGCCC
GCGACGCTGT ATCTGGCGGC GGCCTCGCTG GTGGTGGCGG TGCTGATCGG CACGGTGCTC
GGCGTGATCA GCGCCCGGCG CCCGAACGGC CTGCTCAGCC ACGGCGTCAC CGTGCTGTCG
CTCGCCGGTC ACGCGGCGCC GATCTTCTGG ACCGGCCTGC TGCTTCTGCT GCTGTTCGGA
TCGGTGTGGC CGATCCTGCC GGTCAACGGC ATGACCGACG TGGTCAATCC AAAAACCGGC
TTCGCCTATG CGGCCGACGT CGCCAAGCAT CTGGTGCTGC CGTCGATCAC GCTGGGGCTG
GTATTCGTCG CGCAATATTC CCGGCTCGCC CGCGTCAACA TGATCGACGT GCTGTCGGCG
GACTACATCC GCACCGCGCG CGCCAAGGGG CTGCCGGAGC GGGTGGTGCT GGTCAAGCAC
GCGCTGCGCA ACACGCTGAT TCCGATCGTC ACCGTGGTCG GCCTGCAGTT CGGCAATCTG
TTCGCCGGCG CCGTGCTGGT GGAGACGGTG TACTCCTGGC CGGGCATGGG GCGGCTGGTG
TTCGACTCGA TCCTGCGCCG TGACTACCCG ACGCTGATGG GCGTGCTGTT CTTCTCCGCC
GTGATGGTGA TCGCGGCCAA CATCCTCACC GACCTGGTGT ACCGCCTGAT CGATCCCCGT
ATCCGCGCAG GTGCCCGATG A
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| Protein sequence | MALLTHLFGK LANAVALLLA VLVMNFCLIH LAPGDPVQVI AGEMGGASPE VIAALRAKYG
LDHSLLEQMF TYLGKVAHGD FGYSYYFNQP VLGLILQRLP ATLYLAAASL VVAVLIGTVL
GVISARRPNG LLSHGVTVLS LAGHAAPIFW TGLLLLLLFG SVWPILPVNG MTDVVNPKTG
FAYAADVAKH LVLPSITLGL VFVAQYSRLA RVNMIDVLSA DYIRTARAKG LPERVVLVKH
ALRNTLIPIV TVVGLQFGNL FAGAVLVETV YSWPGMGRLV FDSILRRDYP TLMGVLFFSA
VMVIAANILT DLVYRLIDPR IRAGAR
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