| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1774 |
|---|
| Symbol | |
|---|
| ID | 6375461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium phaeobacteroides BS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010831 |
|---|
| Strand | + |
|---|
| Start bp | 1921568 |
|---|
| End bp | 1922449 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642684267 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001960173 |
|---|
| Protein GI | 189500703 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAGCG CTAAAAAAAT TCTCGGGCTG ATAGGCAGAA ATGTCGGCTA TTCCTATTCA
CCCTATATAC ATAACACCGC TGCTGAAAAG CTCGGCCTGG GGTATTACTA TACGATATTC
AATATCTCAT CTCACGATCT CGTTCCATCA GCCCTTGAAG GAGCAAAAGC CCTCGGCATA
GCAGGCTTCA ATGTCACCAT ACCCTATAAA AAGACCGTGG TTGCCTGCAT GGACAAACTT
TCACCGGAAG CTGAAGCAAT AGGCGCGGTA AATACCATAG TGAACGATAA CGGAACGCTT
ATCGGCTACA ATACCGACAT TGCAGGAATC GTCATCCCTC TTGAACCTTA CGCCTCCATG
ATCGATGCCC AACCTGTGGG GATTTTCGGT AACGGCGGCG CTGCAATGGC CGCAATAGAG
GCACTGAGCA CCTGTTTCAC CCCATCAGGC ATCCGCCTGT TCGTCAGACA ACGGGAAAAA
GGCAGTGAGC TCTGCAGACA ATTCAAGGAC AAAAATCTTC CGATCCCCCT CTCGACGCAT
ACACTGGATG ACCATACTGC TCAACACAAC TGCAGACTGC TCATCAATGC CACACCGATC
GGAACAAAAG GTCTCGACAC CGCTCCTGCC GGCTCTATCA TCCCTTCCGG ATCAGGTGTC
GTTCATTCCG GCCAGATCAT TTTCGATATG GTCTACAACC CTGTGGAAAC CCAATTGCTG
CAACTCGCAA AAGCCACTGG AGCCATTGCG ATACCTGGTA TAGAAATGCT CATCGGACAG
GCTTCCCGGT CATTCGAGAT ATGGACGGGA AAAGCGATGC CGGTCACTAC CGTCAGAAAC
AAGCTGCAGG AACTGCTCCT GACTGAAAAA CGCTCTTCCT GA
|
|---|
| Protein sequence | MYSAKKILGL IGRNVGYSYS PYIHNTAAEK LGLGYYYTIF NISSHDLVPS ALEGAKALGI
AGFNVTIPYK KTVVACMDKL SPEAEAIGAV NTIVNDNGTL IGYNTDIAGI VIPLEPYASM
IDAQPVGIFG NGGAAMAAIE ALSTCFTPSG IRLFVRQREK GSELCRQFKD KNLPIPLSTH
TLDDHTAQHN CRLLINATPI GTKGLDTAPA GSIIPSGSGV VHSGQIIFDM VYNPVETQLL
QLAKATGAIA IPGIEMLIGQ ASRSFEIWTG KAMPVTTVRN KLQELLLTEK RSS
|
|---|
| |