Gene Cphamn1_1124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCphamn1_1124 
Symbol 
ID6374799 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium phaeobacteroides BS1 
KingdomBacteria 
Replicon accessionNC_010831 
Strand
Start bp1210571 
End bp1212361 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content49% 
IMG OID642683626 
ProductLytic transglycosylase catalytic 
Protein accessionYP_001959543 
Protein GI189500073 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.331825 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.414792 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGAGTTT CGCATGTTTA TAGAGTTCCA CTGCTCCTGT TTGTTTTGTT GACGGCGGTA 
TATTCCAATG GATTTGCTGC ACGTGATGAC AGAGTGCCGG ACGATACGAA GGTAGCTGAA
ATACTTGACC GTCTTGTGAC ATCTGAATAT TTCAGCGACA GCCATTTCAA GGAGTGGAAA
GATGGCGGCG TCAATGGTTA TCCTTCGCTT TTTATTCCAC AGTTCGACGA TCAAACCTAT
TCGCAGCGAA TAGCACAGCT GAACAGCAGG ACACAGCTCA AACTGGTCTA TAACAGCCAT
GTTAAAAGCT TTATCAGGCT GTATTCGGTG GATAAACGGA GGCTCACCGC GAAGATTCTG
GGCCTTACAG AGTTGTATTT TCCACTATTC GAGGAGAAAC TGCGGCAGTA CCGTATTCCT
CTTGAGCTGA AATACCTTGC CATTGTCGAA TCCGCTCTCA ATCCTTCCGC CGTATCAAGC
GCCAACGCGA AAGGTCTGTG GCAGTTCATT TACGGAACCG GCAAAATGTA CGGGCTAGAG
TCCTCTCCAT TTGTCGAGGA TCGTTTTGAT CCTGAACAAG CAACCGTCGC CGCATGCCGG
CACATGAGGG ACCTGTATAA CATATATGGT GACTGGTTTC TGGTGCTTGC CGCCTATAAC
TCGGGGGCGG GTAATGTCAA CAAGGCTATT CGCCGTTCGG GCGGAGCAAG AGACTACTGG
AAGATCTGGT CGAACCTTCC TTCTGAAACC AGAGGGTACG TACCGGCATT TATTGCGGTT
ACCTATATCA TGAACTACTA TAACGAGCAT AATATCCGGC CTCTGGAGCC TGTTTATTCT
TATCGCGATA TCGGTTCAGT GAAAGTTTCA GACGTGATCG CGTTTGATCA GGTCAGTGAA
ATGATCGGGA TTTCCGTTGA GGATCTTCAG TTTCTCAATC CTCAGTTCAA GCTGAACCTT
GTGCCTGCGA ATGCCCGGAA TACCTACTAT CTGAGGCTGC CCAAAAAATA TCTCGACAAG
TTCGCGCGGA ATGAAAAAAA AATCTATGCA AAAAAGAGCA GGCAGGGACT TGACGGTGCG
GCTCTACTGG CAAGAATCCG TGAAACAAAG AAAGAGCCCA GAGCAGGAAA ACAGAATATC
CATGTCGTCA GGCGTGGCGA GACCCTCGCC TCCATAGCAC GTTCCTACCG CTGTTATGTC
AGTCAGCTCA TCCAGTGGAA TTCTCTGAAG GACTTCAGGA TCTATCCCGG CCAGAAAATC
AGGGTTTTCG GCGCACCGGC ATCTTCTGTC CGGGTCGGCA ATAAAGCTTC TTCGATGGCT
TATCATAAGG TTCGTCGGGG AGAAAGCCTT GGGTTGATCG CTAAAAAGTA TGGCGTTTCG
ATGAGCAAGC TGGTTTCATG GAACAACCTC GGCAGAAAGC GCACGATCTA TCCCGGCCAG
AAGCTCAAGG TCTACGGTGT ATCATCTTCC ACATCATCAG CATCCACAGC AAAGGCGACA
TACCACAAGG TTCGTCGTGG AGAAAGCCTT GGGTTGATCG CTAAAAAGTA TGGCGTTTCG
ACGAGCAAGC TGGCTGCATG GAACAATCTT GGCAGCAAGC GTACGATCTA TCCGGGGCAG
CGTCTCAGGT TGTCCCCCGC GACGAAAATT CACAAGGTTC GTCGGGGAGA AAGTCTGGGA
CTGATCGCTA AAAAATACGG TGTCACGATC GGCAAGCTGG CTTCATGGAA CAATCTCGGC
AGAAAGCGCA CGATCTATCC CGGTCAGAAG CTGAAAATTC GGACAAACTG A
 
Protein sequence
MRVSHVYRVP LLLFVLLTAV YSNGFAARDD RVPDDTKVAE ILDRLVTSEY FSDSHFKEWK 
DGGVNGYPSL FIPQFDDQTY SQRIAQLNSR TQLKLVYNSH VKSFIRLYSV DKRRLTAKIL
GLTELYFPLF EEKLRQYRIP LELKYLAIVE SALNPSAVSS ANAKGLWQFI YGTGKMYGLE
SSPFVEDRFD PEQATVAACR HMRDLYNIYG DWFLVLAAYN SGAGNVNKAI RRSGGARDYW
KIWSNLPSET RGYVPAFIAV TYIMNYYNEH NIRPLEPVYS YRDIGSVKVS DVIAFDQVSE
MIGISVEDLQ FLNPQFKLNL VPANARNTYY LRLPKKYLDK FARNEKKIYA KKSRQGLDGA
ALLARIRETK KEPRAGKQNI HVVRRGETLA SIARSYRCYV SQLIQWNSLK DFRIYPGQKI
RVFGAPASSV RVGNKASSMA YHKVRRGESL GLIAKKYGVS MSKLVSWNNL GRKRTIYPGQ
KLKVYGVSSS TSSASTAKAT YHKVRRGESL GLIAKKYGVS TSKLAAWNNL GSKRTIYPGQ
RLRLSPATKI HKVRRGESLG LIAKKYGVTI GKLASWNNLG RKRTIYPGQK LKIRTN