| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cphamn1_1123 |
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| Symbol | truA |
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| ID | 6374798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium phaeobacteroides BS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010831 |
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| Strand | + |
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| Start bp | 1209691 |
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| End bp | 1210392 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642683625 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001959542 |
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| Protein GI | 189500072 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0266785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.378732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCATAG AGTATGACGG TACCGATTTT TCAGGCTGGC AGAAGCAGCC GGAAGGGGTG
GTGACTGTTC AGGGTGTTCT TGAAACGACG TTGAGCCGGA TTGTTCAGGA AGAGGTGGTG
ATGACCGCCG CGGGCAGAAC CGACCGTGGG GTTCATGCAA GAGGACAGGT CGCGAATTTC
AGGACGGCCT CCTGTTTGTC AACCGGCAGA CTGCTTCATT CTCTCAACGC TCTCCTGCCT
TCAACGGTGT GTATCAGGGA TATGCAGGAA GTTCCTGATT CATTTCATGC CCGTTACAGC
GCGCTTTTCA GGGAGTATCG TTACTTTTTT CTCGAAAAAC CGTCAGCCTT AGGCAAGCGA
TATGCCGGTG TTTATGGGGG AAGGCTTGAT GTGGATAGAC TGAACCGTTG CGCCGGAGAG
CTGGTCGGCA GGCATGATTT TTCGGCGTAT GCAAAGGAGG ACGCGCAGAA TGGAAGCACT
TTCTGTACTG TCTTTGGCGC GTCCTGGGGG CGTCAGGACG AGAAGGTCGT TTTCAGGATC
GCGGCCAACA GGTTTCTCAG GACCATGGTT CGTTTTCTGG TTTCGGCTCA GCTTGAAGCC
GGTCCGGGTG AACTGACTGA ACGCCTCAGG AGAGGAAACG TTCTGAAAAA CATTGTCCCT
GCAGATCCTG CCGGTCTTTT TTTGTGGAAG GTGCTTTATT AG
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| Protein sequence | MTIEYDGTDF SGWQKQPEGV VTVQGVLETT LSRIVQEEVV MTAAGRTDRG VHARGQVANF
RTASCLSTGR LLHSLNALLP STVCIRDMQE VPDSFHARYS ALFREYRYFF LEKPSALGKR
YAGVYGGRLD VDRLNRCAGE LVGRHDFSAY AKEDAQNGST FCTVFGASWG RQDEKVVFRI
AANRFLRTMV RFLVSAQLEA GPGELTERLR RGNVLKNIVP ADPAGLFLWK VLY
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