Gene BLD_1961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBLD_1961 
Symbol 
ID6363710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBifidobacterium longum DJO10A 
KingdomBacteria 
Replicon accessionNC_010816 
Strand
Start bp2340005 
End bp2341552 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content53% 
IMG OID642681170 
Productputative transcriptional regulator 
Protein accessionYP_001955904 
Protein GI189440823 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACGT TCGATATCGT AAAGCTCGCC TCATATCGCG AGAATAATCG GATTGAGGCG 
AAAGCCGCGA AAGGTGGTCT CCCGCGCAGT ATGTGGGAGA CCTATTCCGC CTTCGCCAAC
ACCTATGGCG GCGTCATTCT GCTCGGCGTC AAGGAACGTG AAGACGGTAC CTTCGAAACA
GTCGGGCTTA CGCCAGCCGA GGTGGAGCAC CTTCGTCAGG ATTTTTGGAA TACGGTCAGC
AATCGATCCA AGGTAAGCGC CGTGCTGCCC ATCGAATCGG AAGTCGAAGT GCTTGAAGCG
GATGATGGCA TGGTGGTGGC TATTCATGTT CCACGTGCTC CACGCGACGA ACGTCCCGTG
CATATCAACG ACAATCTCTT TGAGGGAACC TACCGCCGGC GCGGTGAAGG TGACTATCGT
TGCACGCGGC AGGAGATTTC GGCAATGCTC CGAGATCAGG GAACCGAGAC GATGGATTCC
AAGGTGCTGG ACGATCTCAC TGTTGCCGAT TTCAATGCGG ATACGGTGCG GGCGTATCGC
ACCCGTTTCC GTGCGGCACG TCAGGGCAGT TCCTGGACTG ATCTTGATGA CGAGCGTTTC
CTGCGTGCGG TTGGTGCGGC AATGGTGAGC CGTGAAGATG GTAAGCTCCA TCCCACATTC
GGCGGTTTGC TCATGTTCGG CAACGACTAT GACATCGTGC GCGAATGTCC CCATTACTTT
CTTGACTATC AGGAGACCCT AGACCCGGCG ATTCGTTGGA CCGATCGTGT TCATTCCGGC
GATGGCATGT GGTCGGGCAA CCTCTTTGAT TTCTTTTTCC GTGTGAATCG TAAGCTTGCC
GAGTCTCTGA AGACCCCCTT CAAACTTAAC GGTATCTTTC GTGTTGACGA CACTCCCATG
CATAAGGCGG TTCGCGAGGC GCTGGCCAAC TGCTTGTTCA ACGCCGATTA TTATGGCGTG
CGTGGAGTGG TGGTCAGACG CACACCCGAT AAATTGGTTT TCGAGAATCC TGGTGATATC
CGAACGGGCG TTGAGCAAAT GCGCCTTGGC GGAGTATCTG ATCCGCGCAA CGGACTGATT
ATGAAGATGT TCAGCCTCAT CGATGTGGGG GAGCGAGCCG GTACTGGTGT TCCTGATGTG
TTTGCCACAT GGGCGAATGC AGGACTTCCC GAACCACGGA TTGAGGAAAA ATTCGGCGAG
GCTGATCGTA CGATACTCAC GCTTATGCTG GAATCGGATG CCAAGTCCGC TCACAATGAG
CAGATAATTG ACAATAATGA GCAGTTAAAC GGTCCAAGTG AGCAGATAAC TGACAATAAT
GAGCAGTTAA ACGGTCCAAG TGAGCAGATA ACCGAGAGAC AGCGAACTGT TCTTCGTTTC
GTGGAAAGGA ATCCCAGTAC AACATACGAG GATATGGCTC GTGCTGCGGG AGTTTCATCA
GCGACTGTGC GAAGAGATGC TGAAATACTC ATTGGGCGTG GATTACTCAA GCGCGTCGGC
TCGCGAAAAG CAGGACACTG GGAAGTCCGA GGGAGAGAAG AATCGTGA
 
Protein sequence
METFDIVKLA SYRENNRIEA KAAKGGLPRS MWETYSAFAN TYGGVILLGV KEREDGTFET 
VGLTPAEVEH LRQDFWNTVS NRSKVSAVLP IESEVEVLEA DDGMVVAIHV PRAPRDERPV
HINDNLFEGT YRRRGEGDYR CTRQEISAML RDQGTETMDS KVLDDLTVAD FNADTVRAYR
TRFRAARQGS SWTDLDDERF LRAVGAAMVS REDGKLHPTF GGLLMFGNDY DIVRECPHYF
LDYQETLDPA IRWTDRVHSG DGMWSGNLFD FFFRVNRKLA ESLKTPFKLN GIFRVDDTPM
HKAVREALAN CLFNADYYGV RGVVVRRTPD KLVFENPGDI RTGVEQMRLG GVSDPRNGLI
MKMFSLIDVG ERAGTGVPDV FATWANAGLP EPRIEEKFGE ADRTILTLML ESDAKSAHNE
QIIDNNEQLN GPSEQITDNN EQLNGPSEQI TERQRTVLRF VERNPSTTYE DMARAAGVSS
ATVRRDAEIL IGRGLLKRVG SRKAGHWEVR GREES