Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_1961 |
Symbol | |
ID | 6363710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | + |
Start bp | 2340005 |
End bp | 2341552 |
Gene Length | 1548 bp |
Protein Length | 515 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 642681170 |
Product | putative transcriptional regulator |
Protein accession | YP_001955904 |
Protein GI | 189440823 |
COG category | [K] Transcription |
COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAACGT TCGATATCGT AAAGCTCGCC TCATATCGCG AGAATAATCG GATTGAGGCG AAAGCCGCGA AAGGTGGTCT CCCGCGCAGT ATGTGGGAGA CCTATTCCGC CTTCGCCAAC ACCTATGGCG GCGTCATTCT GCTCGGCGTC AAGGAACGTG AAGACGGTAC CTTCGAAACA GTCGGGCTTA CGCCAGCCGA GGTGGAGCAC CTTCGTCAGG ATTTTTGGAA TACGGTCAGC AATCGATCCA AGGTAAGCGC CGTGCTGCCC ATCGAATCGG AAGTCGAAGT GCTTGAAGCG GATGATGGCA TGGTGGTGGC TATTCATGTT CCACGTGCTC CACGCGACGA ACGTCCCGTG CATATCAACG ACAATCTCTT TGAGGGAACC TACCGCCGGC GCGGTGAAGG TGACTATCGT TGCACGCGGC AGGAGATTTC GGCAATGCTC CGAGATCAGG GAACCGAGAC GATGGATTCC AAGGTGCTGG ACGATCTCAC TGTTGCCGAT TTCAATGCGG ATACGGTGCG GGCGTATCGC ACCCGTTTCC GTGCGGCACG TCAGGGCAGT TCCTGGACTG ATCTTGATGA CGAGCGTTTC CTGCGTGCGG TTGGTGCGGC AATGGTGAGC CGTGAAGATG GTAAGCTCCA TCCCACATTC GGCGGTTTGC TCATGTTCGG CAACGACTAT GACATCGTGC GCGAATGTCC CCATTACTTT CTTGACTATC AGGAGACCCT AGACCCGGCG ATTCGTTGGA CCGATCGTGT TCATTCCGGC GATGGCATGT GGTCGGGCAA CCTCTTTGAT TTCTTTTTCC GTGTGAATCG TAAGCTTGCC GAGTCTCTGA AGACCCCCTT CAAACTTAAC GGTATCTTTC GTGTTGACGA CACTCCCATG CATAAGGCGG TTCGCGAGGC GCTGGCCAAC TGCTTGTTCA ACGCCGATTA TTATGGCGTG CGTGGAGTGG TGGTCAGACG CACACCCGAT AAATTGGTTT TCGAGAATCC TGGTGATATC CGAACGGGCG TTGAGCAAAT GCGCCTTGGC GGAGTATCTG ATCCGCGCAA CGGACTGATT ATGAAGATGT TCAGCCTCAT CGATGTGGGG GAGCGAGCCG GTACTGGTGT TCCTGATGTG TTTGCCACAT GGGCGAATGC AGGACTTCCC GAACCACGGA TTGAGGAAAA ATTCGGCGAG GCTGATCGTA CGATACTCAC GCTTATGCTG GAATCGGATG CCAAGTCCGC TCACAATGAG CAGATAATTG ACAATAATGA GCAGTTAAAC GGTCCAAGTG AGCAGATAAC TGACAATAAT GAGCAGTTAA ACGGTCCAAG TGAGCAGATA ACCGAGAGAC AGCGAACTGT TCTTCGTTTC GTGGAAAGGA ATCCCAGTAC AACATACGAG GATATGGCTC GTGCTGCGGG AGTTTCATCA GCGACTGTGC GAAGAGATGC TGAAATACTC ATTGGGCGTG GATTACTCAA GCGCGTCGGC TCGCGAAAAG CAGGACACTG GGAAGTCCGA GGGAGAGAAG AATCGTGA
|
Protein sequence | METFDIVKLA SYRENNRIEA KAAKGGLPRS MWETYSAFAN TYGGVILLGV KEREDGTFET VGLTPAEVEH LRQDFWNTVS NRSKVSAVLP IESEVEVLEA DDGMVVAIHV PRAPRDERPV HINDNLFEGT YRRRGEGDYR CTRQEISAML RDQGTETMDS KVLDDLTVAD FNADTVRAYR TRFRAARQGS SWTDLDDERF LRAVGAAMVS REDGKLHPTF GGLLMFGNDY DIVRECPHYF LDYQETLDPA IRWTDRVHSG DGMWSGNLFD FFFRVNRKLA ESLKTPFKLN GIFRVDDTPM HKAVREALAN CLFNADYYGV RGVVVRRTPD KLVFENPGDI RTGVEQMRLG GVSDPRNGLI MKMFSLIDVG ERAGTGVPDV FATWANAGLP EPRIEEKFGE ADRTILTLML ESDAKSAHNE QIIDNNEQLN GPSEQITDNN EQLNGPSEQI TERQRTVLRF VERNPSTTYE DMARAAGVSS ATVRRDAEIL IGRGLLKRVG SRKAGHWEVR GREES
|
| |