| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1735 |
|---|
| Symbol | truA |
|---|
| ID | 6363621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 2069082 |
|---|
| End bp | 2069993 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642680935 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_001955678 |
|---|
| Protein GI | 189440597 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0101] Pseudouridylate synthase |
|---|
| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.347749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAC TGCGCATTGA CTTGGCCTAC GACGGCGGCG GATTCTATGG CTGGGCCAAA
CAGCCCAATC TTCGTACAGT GCAAGGCACC ATTGAAGATG CGCTGCACAA GGTGCTGCGG
GTGCCGACCG ATGACGCGGC CGAACCGTTA CGCTTGACAG TGGCTGGACG CACCGACACC
GGTGTACATG CCTCCCACCA AGTGGCGCAT CTGGATGTAT CCGATGAGGT ACTGAATCGC
TGCGTAGGTC ACATGACCAT TCCGGTCACC GAGGCGCTGA CTCGCAGACT CAAGGCTGTG
CTGCCTTCGG ACATCGTCAT TCATGGCATT GCCGTAGCTC CGGTCGGCTT CGATGCCAGG
TTCTCCGCAT TGGAGCGCAC TTATGTGTAT CGGGTCGCCG ATCGTTCGTC TGAGGTCGAC
CCGCGCCTGC GTGGATGCGT ACTTACCGTG GATGAAGCGC TGGATCTGGA GCTTATGAAC
CGCGCAGCCT CATTGACCAT CGGCCTGCAC GATTTTGGTT CCTTCGCCAC TCCGAATCCG
GGAGGCACTA CGATCCGTGA AGTCAAGACC GCCTATTGGC GGCGGGTGCC GATCACTCCC
CTAGTACCGG ATGAGATGGC ATCGCATGAA GCATATCGGA CTCCGTCGCT GGAGTCCGGC
CTGGTAGTGT TCACGATTGT GGCGGACGCC TTTGCCCGCA ATATGGTGCG CTCCCTGGTC
GGCTCATGCA TCAAAGTTGG TTCGGGACGC AAATCACTGG AGTGGTTTGC CGGCAAAATG
GCCGAGCCAG TACGTGAAGG CTCAAGCGGG CCGATTGCGC CGCAGGGCCT GACTTTGGAG
CATATCGCAT ATCCCGCCGA TGATCAGCTG GCCGCAAGAG CCGAGGCCAT TCGGGCCGTA
CGTACGTTGT AG
|
|---|
| Protein sequence | MTRLRIDLAY DGGGFYGWAK QPNLRTVQGT IEDALHKVLR VPTDDAAEPL RLTVAGRTDT
GVHASHQVAH LDVSDEVLNR CVGHMTIPVT EALTRRLKAV LPSDIVIHGI AVAPVGFDAR
FSALERTYVY RVADRSSEVD PRLRGCVLTV DEALDLELMN RAASLTIGLH DFGSFATPNP
GGTTIREVKT AYWRRVPITP LVPDEMASHE AYRTPSLESG LVVFTIVADA FARNMVRSLV
GSCIKVGSGR KSLEWFAGKM AEPVREGSSG PIAPQGLTLE HIAYPADDQL AARAEAIRAV
RTL
|
|---|
| |