Gene BLD_1543 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBLD_1543 
SymbolxynB2 
ID6364358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBifidobacterium longum DJO10A 
KingdomBacteria 
Replicon accessionNC_010816 
Strand
Start bp1833662 
End bp1835257 
Gene Length1596 bp 
Protein Length531 aa 
Translation table11 
GC content62% 
IMG OID642680734 
Productbeta-xylosidase 
Protein accessionYP_001955486 
Protein GI189440405 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3507] Beta-xylosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000200892 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCTCA CCGGCACCCT ACGCAAGGCG TTCGCCACCA CACTGGCGGC CGCCATGCTC 
ATCGGCACGC TGGCCGGCTG CTCGTCGAAC GCCAACTCGA ACGCATCGTC GAACGCCAAG
AACTCCAGCG ACTCCAGCCA GACCAGCGCC ACCGAGATCA AGCGCGGCGA ATCGCACGAT
CCATCCATCG TCAAGGCCAA CGGCAAGTAC TACATCTTCG GGTCGCATCT CGCCTGGCTG
AAAAGCGACG ACCTCGTCAA CTGGACCAGC TTCAAAAACA ACCTGAGCAC CGACTACGAG
AAGATCTTCG CCGACATCTG GACCAACTGG TCGAAGCAGT CCGCCAACCC GGACGTCAAG
GGCAACATGT GGGCCCCTGA CGTCATCTGG AATGCAACGA TGAAAAAGTG GTGCATGTAC
ATGTCGATCA ACGGCGCTAA CTACCGATCG GCAATCGTGC TGCTCACCGC CGACGACATC
GAGGGCGACT GGACTTACGT CGGCCCGGTG ACCTACTCCG GCTTCGAAAA GGTCAACGCC
TCCAAGACCG ACGTCTGGAA GGTGCTCGGC GAAGGCGCCG ACCTGACGCG GTACACGTCG
CAGACCGACA CCGGCATCAA CGCGATCGAC CCGTGCGTCA AGCAGGACGA CAACGGCGAC
CTGTGGATGA CGTTCGGCTC ATGGTTCGGC GGCATGTGGA TGTTCAAGCT CGATCCGAAG
ACCGGCCTGC GCGACTACAG CACCACGTAC CAGACGGTCA AGAACCAGTC CGACGCCTAC
TACGGCATCA AGCTCGGCGG CGGCTTCGGC AACTCCGGCG AAGGCTCGTA CCTGCTGCAT
ACCAACGGCC ACTGGTATCT GTTCGCATCC TACGGCAACC TGCAGCAGAC CGGCGGCTAC
CAAGTGCGCA TGTTCCGCGC CGACAAGATC ACCGGTCCGT ACATCGATGA AAACGGCAAC
GCCGCAGTCA GCGAGCGCGC CATCGGCAAC AACTGGCAGA GCGAGGTCGG CGTGCGTCTC
ATGAGCTCGA TCCAGTGGAG CGGCAACGAC AACTCGCACA TCGAAGTCGC GCAGGGCCAC
AACTCGGCGT TCGTGGACGA CGACGGCACC ACGTACATCG TGTACCACAG CCGCTTCTCC
GACACCGGCG AGATGCACCA GGTACGCGTG CGCGAGCTGC TGCCGACCGA CGACGGCTGG
CTGGTCGCCG CGCCGTACGA ATACACCGGC ACCAAGGCCG CCGACACCAA GTACGACGCG
AAGAACGTGG CCGGCGACTA CGAGTTCGTG ATCCACGACC AGAGGACCTC GTTCAAGGGC
CCGAAGAAGG TCACCGACAA GCACAGCACC GACTACCGCG GTGTCAACAA GCCGGCGAAC
ATCACGCTGA CCGAGGACGG CAAGGTGACC GGCGACAAGA CCGGCACGTG GAAGCTCGAC
AAGTCCGACG GCACCGGCGA CATGACCATC ACGCTCGACG GGGTGGAGTA CCACGGCGCA
TTCGACAGGC TGCCGCGCGA CAAGGACGAC CGCAAGGTCG AGATGACGTT CTCCGTCATC
GGCGACAACC TCTGCGCCTG GGCCTCGCAG AAGTAG
 
Protein sequence
MTLTGTLRKA FATTLAAAML IGTLAGCSSN ANSNASSNAK NSSDSSQTSA TEIKRGESHD 
PSIVKANGKY YIFGSHLAWL KSDDLVNWTS FKNNLSTDYE KIFADIWTNW SKQSANPDVK
GNMWAPDVIW NATMKKWCMY MSINGANYRS AIVLLTADDI EGDWTYVGPV TYSGFEKVNA
SKTDVWKVLG EGADLTRYTS QTDTGINAID PCVKQDDNGD LWMTFGSWFG GMWMFKLDPK
TGLRDYSTTY QTVKNQSDAY YGIKLGGGFG NSGEGSYLLH TNGHWYLFAS YGNLQQTGGY
QVRMFRADKI TGPYIDENGN AAVSERAIGN NWQSEVGVRL MSSIQWSGND NSHIEVAQGH
NSAFVDDDGT TYIVYHSRFS DTGEMHQVRV RELLPTDDGW LVAAPYEYTG TKAADTKYDA
KNVAGDYEFV IHDQRTSFKG PKKVTDKHST DYRGVNKPAN ITLTEDGKVT GDKTGTWKLD
KSDGTGDMTI TLDGVEYHGA FDRLPRDKDD RKVEMTFSVI GDNLCAWASQ K