Gene BLD_1402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBLD_1402 
Symbol 
ID6364115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBifidobacterium longum DJO10A 
KingdomBacteria 
Replicon accessionNC_010816 
Strand
Start bp1626420 
End bp1628075 
Gene Length1656 bp 
Protein Length551 aa 
Translation table11 
GC content53% 
IMG OID642680586 
Productputative transcriptional regulator 
Protein accessionYP_001955345 
Protein GI189440264 
COG category[K] Transcription 
COG ID[COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCATGT TGCCGGCCAA AGAAAGTTTG ACGGTTGAGT TCAAGAGTGA GCAGAAGCGC 
CCTCAATCGC ATGATGAAAT TGTTGACAAC GTAGTGGCTC TAGCCAATAC CGAAGGCGGC
ACACTGTATC TCGGTATTGA AGACGATGGC ACTGTGACCG GCGTATGTGA CGAGCATCGC
AATATCAATG GACTTGCGGT ACTAATTTTC AATAAGACTG TTCCGCAGCT TCCCGCTCGC
GTGGCGCTCT TGTATGAGAA CGAGGTGCCG ATAGTCAGTA TTGAGGTGGA TAACAGTCAG
CAAATCGTAT CTACCAGTCA GGGGAAGACA TTGCAGCGCC GGCTGAAAGC AGACGGCTCG
CCTGAGGTCG TTCCGCTGTT TGTTTCCCAA TTCATTAGCC GTTTATCTCA GCAACGGTTC
TACGATTTCA GCGCGCAACC TGCACCAGAG GCTCGGTTGG ACGATTTGAA TCCAGACTCA
CGGAACAAGT TGAGAAGCCA TATTCGCAGT GCCAATGCGC AAAACTCGTT GTTGTCTTTT
ACTGATGAGG ATTTCGATCG GGCACTTGAG CTGGTTGTTG ATGGCCCGTA TGGATTGCAG
CCATCTGTTG CTGGTCTGCT CACCATTGGT TCGGTTGATG CTATTCATCG ATCGGTTCCA
GCCGCATCGG CTGTTTTTCA AGTGATGAAA GGCATGTCTC CAAAGGTCAA TATGGATCCG
TTCGTGTTGC CTTTGGTGGA TATGTTTGAT CGTGTAGGCG AGCTGATGGA GCCATGGAAT
CCCAGCCACG AAGTCATGAG CGGCTTGATT CGTGTCGATC TGCCAGACTT CGATCGAGGG
GCATTCCGTG AGGCAATGAT TAACGCTTTC TGCCATCGCG ATTATGCACG AATGGGTTCG
GTGAGGTTCC TGGTTGATGA TGATGGGTTG ACCATAGCCA ACCCCGGAGG ATTCATAGAG
GGTGTCTCCG AAGATAACCT GCTTACTGCA CAACCGCGTT CCCGCAATCC GCAGCTTGCC
CTGATTCTGA AAGCTGCCGG ATATGTTGAA CGCACCGGAC GAGGCGTGGA TACCATCTAT
GCCGGGTCGA TTGCGGCGGG TGGTTCTTTC CCGGATTATT CACAGTCCAG TGCTGAGGAA
GTTATCTTGT TCTTGCGCCG TGTGGTACCT GACGAGGCAT TCGTGACCAT GATTGGCGAC
GAGGAACGTC GACGTGGGGC TCCATTGCCG GTCTGGTCAC TGATTGTGCT CTCGCTGCTG
CGTGAGCATC GTAGGCTTAC CGTGGTCCAA TTGTGCGATT TCTCCCATTT GGAGCATCGA
CGCATCGTGT CCGCTGTTGA GAATCTGGTG GAAGCTGGTT TGGTAGAGGG GGTCGGTAGC
GGGAGCTCTC GTTCGTATAT GCTGAGTGCC CGAGTGTACA AACGTTCAGA GGGGCTGGCG
TCTTACGTGC GCCAGCGTGA CATCGATGCC ACCCGGCGCA GTGGCCTTGT TCTGGAGTTC
GCCGAAAAAA ATGATGGTGT CGTCACTACG GCGGATGTCA TGGATTTGTT TGGCCTGAGC
TATATCAGTG CATACCGGTT GTTGAAGAAG CTAGAGGATG CGGGCAAGTT GCGCCGCGAG
GGGAATGGGC CGTCATCCCG ATACGTGTTG GGATGA
 
Protein sequence
MLMLPAKESL TVEFKSEQKR PQSHDEIVDN VVALANTEGG TLYLGIEDDG TVTGVCDEHR 
NINGLAVLIF NKTVPQLPAR VALLYENEVP IVSIEVDNSQ QIVSTSQGKT LQRRLKADGS
PEVVPLFVSQ FISRLSQQRF YDFSAQPAPE ARLDDLNPDS RNKLRSHIRS ANAQNSLLSF
TDEDFDRALE LVVDGPYGLQ PSVAGLLTIG SVDAIHRSVP AASAVFQVMK GMSPKVNMDP
FVLPLVDMFD RVGELMEPWN PSHEVMSGLI RVDLPDFDRG AFREAMINAF CHRDYARMGS
VRFLVDDDGL TIANPGGFIE GVSEDNLLTA QPRSRNPQLA LILKAAGYVE RTGRGVDTIY
AGSIAAGGSF PDYSQSSAEE VILFLRRVVP DEAFVTMIGD EERRRGAPLP VWSLIVLSLL
REHRRLTVVQ LCDFSHLEHR RIVSAVENLV EAGLVEGVGS GSSRSYMLSA RVYKRSEGLA
SYVRQRDIDA TRRSGLVLEF AEKNDGVVTT ADVMDLFGLS YISAYRLLKK LEDAGKLRRE
GNGPSSRYVL G