| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1297 |
|---|
| Symbol | cpaF |
|---|
| ID | 6363115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 1496022 |
|---|
| End bp | 1497089 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642680479 |
|---|
| Product | Flp pilus assembly protein ATPase |
|---|
| Protein accession | YP_001955240 |
|---|
| Protein GI | 189440159 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCG TAATCACTCG GGCTGATGAG CCCGGCGCAG TGCCCAGAAC TGTGTTCTTC
GGTCTATTGA ATGATGTGGC ATCCGACCCG CAGGTTACCG ATCTGGCGGT GACCTGTGAT
GGCCGCGTTT GGGCGGACCG CGGCAACGGC ATGCGAGAAA CAGTATTGCG TGTGCCGTTT
CGCTCGCCGC AAGTAGTTCG AGAATACGCC GTCCAACTGT GCGCGCAGCT TGGGCGCAGA
CTGGATGATG CCTGCCCGAT AGCGGACGCC GCCAGTCCAG ACGGCATCCG CGTGCATGCG
GTGATTGCCC CATTGGTGCC ACAAGGTGCC GCAATCTCCA TACGGTTCCC TGACAGGACC
ATGGCATCGT TGCGACATCT GAGCCAATTA GGTGTATTCC CGGCTGCTTG GCTGCCGATG
TTCGTGGGAC TGGTGCGCAG ACATGCCACA GTGCTGATTA CCGGCGGAAC AGGCGTGGGC
AAGACCACCT TGCTCAAGGC GCTGCTGGCG CAATGCGATG TGAACGAGCG CATCGTCACC
GTAGAGGAAG TTCGTGAACT GGGAGAACTG GGGCGTGGCG ATCATGTGTC GTTGGTAACG
CGCGAGGCGA ATGTGGAGGG CGTCGGAGCC ATAAGTCTGA CGGACTTGGT CAAAGCGACG
TTGCGAATGC GCCCCGACCG CGTGGTGCTG GGCGAATGCC GTGGCGCGGA AATCGTCGAC
CTATTGCGCG CGTTCAATTC TGGTCATCAC GGTGGCATGA CCACTGTGCA TGCGGACGGC
GTGAACCGAG TACCGTCCAG GCTGATTTCG CTTGGATTAC TCGCCGGAGT CAGTCCACAG
GCGTTGGCCA TGCTGGCGGC AGGCGCTTTC GACGCGGTGG TGCATTTGGA GCGAGTGAAC
GGACAGCGGC GTATCACGCA GATCGGCGAA CTGCGTGTAG CACATGGTGA ACTGGCAGGA
ACACCGCTGG CGGTATGGAA TGGCTGCCAT CCTCCTCGGT ATGCCGCCGA ATGGGGGCAC
TTCATTGAAC GATGGGGCAT CGTTCCCGGG CCGAGTGGTG GTGGGTGA
|
|---|
| Protein sequence | MAAVITRADE PGAVPRTVFF GLLNDVASDP QVTDLAVTCD GRVWADRGNG MRETVLRVPF
RSPQVVREYA VQLCAQLGRR LDDACPIADA ASPDGIRVHA VIAPLVPQGA AISIRFPDRT
MASLRHLSQL GVFPAAWLPM FVGLVRRHAT VLITGGTGVG KTTLLKALLA QCDVNERIVT
VEEVRELGEL GRGDHVSLVT REANVEGVGA ISLTDLVKAT LRMRPDRVVL GECRGAEIVD
LLRAFNSGHH GGMTTVHADG VNRVPSRLIS LGLLAGVSPQ ALAMLAAGAF DAVVHLERVN
GQRRITQIGE LRVAHGELAG TPLAVWNGCH PPRYAAEWGH FIERWGIVPG PSGGG
|
|---|
| |