Gene BLD_1054 details

Gene Information

• Locus tag: BLD_1054
• Symbol: rimM
• ID: 6363010
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 1239248
• End bp: 1239862
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 642680225
• Product: RimM protein for 16S rRNA processing
• Protein accession: YP_001954998
• Protein GI: 189439917
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACAGC AAGACATGCA CGGCGACCCT CAGCAGCTCG AGTTGCTGAG GGTCGCTCGT 
ATTGGCCGCG CACAGGGCCT GAAGGGCGAA GTCACCGTGC GCCTGTACAC CGATGATCCC 
GAGTGGCGCT TCGAGCCGGA CTCCGTGCTC TACAGCCAGG ATGGCGAGAC CGAGTACATC 
GTCGAGGGCT CACGCACGTT CAAGGATCGT TGGATTCTCA AGCTTGAGGG CGTCGACGAC 
CGCAATGCCG CCGAGGCCCT AAACGGTGTC GAACTCTACG GCGAGGCCGA CGACGCAGAA 
GATATGCTCG AAGCCGACGA ATGGTATCCC AAGGATCTTA TTGGCCTTGA GGCCCGTCTA 
GTCGAGGGCA ACGGTCTGGG ACTGCCCGCC GGCCAAGTGG TCGGCAAAGT GGTGGATGTG 
GTCGACTCCC CCGCTCAGTC ACTGCTCAAG ATTCGTTTGA CCGAGCCGGT GGTAACCGGC 
CAGAATTCCA AGGGCGAGGA TGTGGTCGAG AAGACCGCGT TGGTCCCGTT CGTGGAGGCC 
TTGGTCCCCG ACATCGATCT GGAGGAGCAA TACCTCACGC TCGATCCACC CGGTGGTTTG 
ATTCCGGGAT TGTAA 

 

Protein sequence

MAQQDMHGDP QQLELLRVAR IGRAQGLKGE VTVRLYTDDP EWRFEPDSVL YSQDGETEYI 
VEGSRTFKDR WILKLEGVDD RNAAEALNGV ELYGEADDAE DMLEADEWYP KDLIGLEARL 
VEGNGLGLPA GQVVGKVVDV VDSPAQSLLK IRLTEPVVTG QNSKGEDVVE KTALVPFVEA 
LVPDIDLEEQ YLTLDPPGGL IPGL