| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1041 |
|---|
| Symbol | rnc |
|---|
| ID | 6362951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 1224944 |
|---|
| End bp | 1225672 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642680212 |
|---|
| Product | ribonuclease III |
|---|
| Protein accession | YP_001954985 |
|---|
| Protein GI | 189439904 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0571] dsRNA-specific ribonuclease |
|---|
| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.834225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATG AAACCCCACA GCAGCCGACG CCGGCCAACG AGCTTCTTGA AGCGTTGGGC
ACCACTCTCA GCCCGGATCT GCTCGTGCAG GCACTCACCC ACCGTTCCTT CTCGCATGAG
CACCCCGGCG TGGCCAATTA CGAACGCCTC GAATTCCTGG GAGACGCGGT GCTCGAACTG
GTCTCCACTG AAACGCTGTT CACCATTCAC CCGGATATGA CCGAGGGGCA ACTGGCCAAG
ATGCGCGCCA AGGCCGTCTC CGAAGACGCG CTGAGCGCCA TCGCCAAAAC CAAGCTCAAG
GTGGGCCCCT ACATTCTGCT GGGTCACGGA GAAGCCGAGC AGGGCGGCGC GGAGAAGAAC
TCCATCCTAT GCGACATCGT GGAATCGCTC ATCGGCGCGA CCTTCCTGGA ACACGGCATC
GACGAGGCAC GCAAGGTGAT TCACCGGCTT ATTGACGACA CGCTCGCCGA AGTGGCCACC
GAGGGCCCGG CACTTGACTG GAAGACCTCG CTGACCGTCA AGGCGCACGG CCTCGGCAAG
GAGGAGCCTG TCTACCATAT GGAGGTCTCC GGCCCGGAAT ACGCGCAGAT CTTCACCGCG
CGCGTCTCAT TGGGCGAGAA CGGCGACATC ATCGGCATCG GTAAGGGCTC CAGCAAGCGT
AAGGCGCAGC TGGCGGCCGC CGAAGCGGGC TGGAAGTCAC TGGACTCGTT CAAGACGCGG
ACTAAGTAA
|
|---|
| Protein sequence | MSNETPQQPT PANELLEALG TTLSPDLLVQ ALTHRSFSHE HPGVANYERL EFLGDAVLEL
VSTETLFTIH PDMTEGQLAK MRAKAVSEDA LSAIAKTKLK VGPYILLGHG EAEQGGAEKN
SILCDIVESL IGATFLEHGI DEARKVIHRL IDDTLAEVAT EGPALDWKTS LTVKAHGLGK
EEPVYHMEVS GPEYAQIFTA RVSLGENGDI IGIGKGSSKR KAQLAAAEAG WKSLDSFKTR
TK
|
|---|
| |