| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0954 |
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| Symbol | uvrD3 |
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| ID | 6363797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 1100117 |
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| End bp | 1104148 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642680122 |
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| Product | superfamily I DNA and RNA helicase |
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| Protein accession | YP_001954898 |
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| Protein GI | 189439817 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACGT TCACTCCCAG TGCGGAACAG GCCGCCATCA TCGATGCGCC AGTCGATGCT
GACGTATTGG TGGTTGCCGG TGCCGGTTCC GGCAAAACCT TTACGATGAC CCAACGCATC
ATCGCGCTTA TCAATCGAGG TGTGGCACCT GAACGCATCC TGGGCCTGAC CTTCACACGC
AAGGCCGCAG GCGAACTGCT GGAACGCGTC TCCGCCGCAG TGGCCGGTGA TATGGCGGGC
TCTACGACCG CCACGGTGTC TGATCGGTCA TTCCTCAAGC CGGCCATTTT CACGTATGAC
GCCTTCTTCC AGACCATCGT GCGCCAATAT GGACTGCTTG TCGGATTCGA TCAGAACACG
CAACCATTGA GCGCAGCCGG AGCGCTTCAA CTGGCCACCG AAGTCATCGA CAGTCACATG
GATCTGGCGT TCAGTGAGGA TTTTGGCGCC TTCTCCAGTT TGGCGAACCG TGTTCTGGCG
TTGTCGGATG CCATTGGCAG TGCCATGATC GGTGCCGGCT GCACCAGCTT CGATGATGCG
ATCAATCGAG TACGGCAATG GGATTCGGCA TTCATCAATC GATTGCAACA AGCCGTTGCA
GACGAACCCA TGCCCGAGGA CGAGCCGAAA ATCCCCAAGA TCAAACGACT GAAGAAAGAT
ACCGACGCCA GCTGGCAAGC CAAGCTCGAT GACCGTGCCG AACATTTGCA CGCCCGCTGC
ACCTATCATT GCGGTGCGCT GCTGGAGACC ACACGCAAAC GCGATATTCT GCTCCAGCTG
GTGGAGGCCT ATGCCCAAGC CAAGCGGGAA CGCAATATGG CCGAATTCTC CGACTTCACC
ATTGCCGCGT ATCAGCTTAT CGAGCGCTTC CCCTCCATCG GAGAGCGTAC GCGCCGCAGG
TACAGCCACG TGCTGCTCGA CGAATATCAG GACACCTCCA CCACGCAGGC CGCTCTGCTG
GCAGCACTGT TCCACGTGGA TGCGTCACAG AGGTCCGCCG TCAACGCGGT GGGTGATCCG
TTCCAGTCGA TTTACGCATG GCGTGGTGCC AGCCCTGGTG CATTCCGTAT GTTCCAGCAA
GATTTCCACC TGTCTGCCGG ATACAAGCCA TTCCCGCTGT CCGTCACCAG GCGAAACAGC
CGTATAGTGC TCGAAGCCGC CAATAATCTC ACGCTGCCGT TGCGCTCCAA TCCGTCGCGT
CCTTCCAGCT CATTGATGCG TGAGGTCGAT GTCTCATCGC TCGACCCCAT GCCTGATGCC
CCCGAAGGAA CATTGGGAGT ACTGGGCTTC GCCACGGCCG GGCAGGAGAT CGACGCCGTA
GTGCGTTTCT GCAAGACGGC CATCGCACGG CACCGTTCCG CAGCCGAACA ACAGGAACAG
ATGCCGGGCG AACAGAAAGC GCCGGTCGCC GTGCTGTTTC GGTCCAAATC ACATATGCCC
GAATATCAGG CGGCATTGGA ACAGGCCGGA TTGACCACAT TCGTGGTCGG CTATTCCGCG
CTGTTGGAAC GTCCGGAAAT CCGCGATCTG ATGGCGTTGC TGCACGTGGC CGCCGACCAC
ACCGATACGG GATCGCTGAT GCGCTTGCTG GCCACGCCAC GATTCACCAT GTCCGCAGCG
GATTTGACCA TGTTGGCCCG TTTTGCTGAA GAACAGAACA CGGAACAACG CTTCCAAGCA
TTGGTGCAGG CCGGCCTTGC CCAACCGGAT ACACCAGCGA ATGAATGGGC GGCTGTGGTG
CGTGAGTACC GCGATCAGGT GGCCAATGCG GTATTCCTGC CAGACGTATT GCTACGCGGC
GACCTGGTAA AACTGCTTGA ACGGTTGAGC GCACACGGGC GCAACGCCAT AACCCGGGCC
GCGGTGATGC TCCGTCAGGT GCATGATGCC GTCGGGCGGC CACTGGGCGA CGTGATTCGC
GCCGGCATAG AAGCGTTGGA TCTTGACATC GACACCGTAT TGGCCGGTGT GCTGCATAAT
CCGCAGCACC GCGCCAATCC CGCTTTGGCG CATATGCCTA TGGATGCGAT TGTGGATTTG
GTGGATACGT ACACGCAAGA GATTGCCGCT GAGCAAACTC CCTCGTTGCA TGGGTTCATC
ACATGGGTGG ATCATCTGGC TTCGGTGGAG GATGAAGCCG CCAGTCTCCC TGACGCTCCG
GTGGATGTGG AACTGATGAC CGTACACCAG TCCAAAGGGT TGGAATGGGA TGCCGTTGCG
GTAGTGGGGC TTACCGCCGT CGGATTCCCC AGCAATCAGG GCGACCATCT CAAGATCGTG
CTGGACGAGC ACCATACGGG AGGCACCGAG CAAGGTCACT GGACCGCACC CGAATATCAT
GAGACCGCCG ACTCCTGGCT CACCAACCCC ACCGCCGTAC CCGTGCCTAT GCGTGCCGAT
GCCGGCATTC TGCCGCGATT CCCCCATGAT GCCGATGTGG AAGCCGACCC CATCGCATCG
TTGGCGGCTT TGGATGATGT GGAGCTTATT GATGATGAAG TGTTCGGCTC CATGCGCGAA
TTCGGCGATG GCGTGGAAGA AGTGGATGCA TCCGGCTGGT ATTTGACGCA GGCGGAGGAA
TATGGGCGCC GGCTGCATGC CGACGAACGT CGATTGATGT ATGTGGCGCT TACCCGTGCG
CGAGAAGATG CCCTGATGAC CTATTGCGCC TATACGGGCG AATCCGGGCG GGACCCGTCA
GTGGTGCCCA AAGGCTCTCG CGCCGCTCAG CCATCCAATT TCTGGCTTGA AGTGCATGAC
GCGCTCCAAG CCCGTGAACA TGCGATATCG GCTCAGGACT GTGTGGAACG GCTGCAAGCC
GCCAATGCCG GGAAGCCCAT GCTGATCTCG GCGCAAGGCG AAGCGATTGC CACTCCCGAA
GGGTTCTTTA TCGGAGAGCA TGCCGCGGCA TACGGTGACG CCGTGGTGGG GGAGGCATGG
CAGACGCCGA TTACGCAGAC GGATGCCGCT GTCGAATTGC CGTGGCCGGC TACCCTCAGC
GACGCAGTGC ATGAACAGCT GTCACGTGGC ATCGATGTTA TCGCCGCAGA TTCCTCGTCA
CTTGAGCAGC ACCAAGACGC CGGTCCACTG CTGCAACGGG CGCAATTGCT GGTGGACGAC
GCCGATTTGA TGGCCGATGC CGCCAGCGGC CAGTCGCTTG ATGAGGCAGT CAAAGCCAAG
GCGCAACGCG TTCTGGCTGC AGGACGCCAG AACGTGACAA GCCTGCAAGC CCGCGTAGGT
GGCATGAACG AACGGGAGGA GCGCCTCTAC TGGCGTAGCA TTATCCGCCC GATTCCGCGC
ATATCGTCTC CGGCGGCCGA GGCCGGCACG CAGTTCCATG CGTGGGCTGA GCAATTCATC
AATGCCGGTA AGCCGGATGA AGCGGTACTG GCATATGAAG CCGAATCAAG TATGCCGCAT
ACAGGTCAGG ATGCGGGATT CGTTTCCCGG GAAGCCATGT TGGCCGATTT GGCCGAACGG
GAGCGGCAAT GCCGCAAGCC ATCCACACGG CAGCCCGCTG TCCCACAGCC CACGGCTCAA
CAATCCGCAT CCGCCGTATC CGCCGCCTCC GCCACTTCCA TAAGTAGCGA CAATGCCACC
GAGTCCAAGC TGGTGGCGTG GCAGCGCAGA CTGGCCGAAT CATCGTGGGC CAAGCGCATC
CCGGCGTGGA CGGAGCGTGC CATCGTCGTG GACGTGCCGG GCGTGGGCCT GGTCAATGGC
AAACTCGATG CGGTATTCAT CGGTGGACTT GACCCGTCCA GCACCACCGC ACGCTTTACC
GTGGTCGACT GGAAAACCGG TCGTCGGCCC ACCAAGCCAG ACGACATCAC CCGCAAACTC
GCCCAGCTCG ACATGTACCG ACTGCTGCTG GCAGCGGTCG AAGGTGTGGA ATTGGACAGT
ATCGACGCCA CTCTCTACTA TGTCAGTGAG CCCGACGAGG GCTTGCGCGA GCTTCACGCC
CGCGCGAAAA CCAAACAGGA AATCCTTACC GAGTTGAGCT CCGGCATTCC CGAACAATCT
GACAACGACT GA
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| Protein sequence | MSTFTPSAEQ AAIIDAPVDA DVLVVAGAGS GKTFTMTQRI IALINRGVAP ERILGLTFTR
KAAGELLERV SAAVAGDMAG STTATVSDRS FLKPAIFTYD AFFQTIVRQY GLLVGFDQNT
QPLSAAGALQ LATEVIDSHM DLAFSEDFGA FSSLANRVLA LSDAIGSAMI GAGCTSFDDA
INRVRQWDSA FINRLQQAVA DEPMPEDEPK IPKIKRLKKD TDASWQAKLD DRAEHLHARC
TYHCGALLET TRKRDILLQL VEAYAQAKRE RNMAEFSDFT IAAYQLIERF PSIGERTRRR
YSHVLLDEYQ DTSTTQAALL AALFHVDASQ RSAVNAVGDP FQSIYAWRGA SPGAFRMFQQ
DFHLSAGYKP FPLSVTRRNS RIVLEAANNL TLPLRSNPSR PSSSLMREVD VSSLDPMPDA
PEGTLGVLGF ATAGQEIDAV VRFCKTAIAR HRSAAEQQEQ MPGEQKAPVA VLFRSKSHMP
EYQAALEQAG LTTFVVGYSA LLERPEIRDL MALLHVAADH TDTGSLMRLL ATPRFTMSAA
DLTMLARFAE EQNTEQRFQA LVQAGLAQPD TPANEWAAVV REYRDQVANA VFLPDVLLRG
DLVKLLERLS AHGRNAITRA AVMLRQVHDA VGRPLGDVIR AGIEALDLDI DTVLAGVLHN
PQHRANPALA HMPMDAIVDL VDTYTQEIAA EQTPSLHGFI TWVDHLASVE DEAASLPDAP
VDVELMTVHQ SKGLEWDAVA VVGLTAVGFP SNQGDHLKIV LDEHHTGGTE QGHWTAPEYH
ETADSWLTNP TAVPVPMRAD AGILPRFPHD ADVEADPIAS LAALDDVELI DDEVFGSMRE
FGDGVEEVDA SGWYLTQAEE YGRRLHADER RLMYVALTRA REDALMTYCA YTGESGRDPS
VVPKGSRAAQ PSNFWLEVHD ALQAREHAIS AQDCVERLQA ANAGKPMLIS AQGEAIATPE
GFFIGEHAAA YGDAVVGEAW QTPITQTDAA VELPWPATLS DAVHEQLSRG IDVIAADSSS
LEQHQDAGPL LQRAQLLVDD ADLMADAASG QSLDEAVKAK AQRVLAAGRQ NVTSLQARVG
GMNEREERLY WRSIIRPIPR ISSPAAEAGT QFHAWAEQFI NAGKPDEAVL AYEAESSMPH
TGQDAGFVSR EAMLADLAER ERQCRKPSTR QPAVPQPTAQ QSASAVSAAS ATSISSDNAT
ESKLVAWQRR LAESSWAKRI PAWTERAIVV DVPGVGLVNG KLDAVFIGGL DPSSTTARFT
VVDWKTGRRP TKPDDITRKL AQLDMYRLLL AAVEGVELDS IDATLYYVSE PDEGLRELHA
RAKTKQEILT ELSSGIPEQS DND
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