| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0649 |
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| Symbol | srmB |
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| ID | 6364219 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | - |
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| Start bp | 738741 |
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| End bp | 740927 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642679807 |
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| Product | superfamily II DNA and RNA helicase |
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| Protein accession | YP_001954593 |
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| Protein GI | 189439512 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCCCGTA ATAATTTCGA TGATCGTGAC GATTCCGCTG ATTTCCAGAT GAACGACAGC
GCGGAATCCC GCCCCCTTAC CTTTGGCGAA CTTGGCGTAC CCGGACCGCT GGTGCGCGTG
CTTGCGGCAG ATGACAAGAA GACCGCATTC CCCATTCAGG CCGACACCCT GCCCGATTCA
CTGGCCGGCC GCGACATTCT CGGCCGAGGT CGCACCGGCT CCGGCAAAAC CCTCGCATTC
TCCATTCCGC TGGTCACCCG CCTCGGTTCC TACGATTCGT TCGGCGAAAT CGCGATGGAG
GAGTTCCGCA AGGAAATCAA GCGCCGCAAG AAGGCCAGCC TGGAAGAGCG CCGCGCCGAC
GACTTCCTAC CTCACCCGCG CGGCCTGGTG CTGGCCCCCA CCCGCGAGCT CGCGAACCAG
ATCAACGACG TGCTGATGCC GCTGGCCCAC ACGTTCGGCA TGAACACCAC CACGGTGTAC
GGCGGCGTCA AGTACATCCA CCAGATCCGC GATCTGAAGG CCGGCGCCGA TATCGTGGTC
GCCTGCCCGG GCCGCCTTGA GGACCTGCTG CGCCAGCAGG CGCTCACGCT CTCGTCCGTC
GAAGTCGTGG TCATCGATGA GGCCGACGAA ATGGCCGATA TGGGCTTCCT GCCACCGGTC
AAGCGACTGC TTGAGCAGAT TTCGCCCGAC GCCCAGCACA TGCTGTTCTC CGCCACGCTC
GATCACGGCG TGGATGAAGT GGTGAACACC TTCCTGCACG ATCCCAAGGT GCACGAGGTC
GATTCGGCCA CCACCGAACC CGACCTGATG ACCCACCACG TGTTCGAAAC CACGCGCGGC
GACAAGCACG AACTCGTGCG CATGCTCGCC TCGGGCGAAG GCCGCCGCAT CCTGTTCACC
CGCACCAAGT TCCAGGCCAA GAAGCTCGCC AAGAACCTGA CGCAGAACGG CATTCCGGCC
GCCGAGCTGC ACGGCAACCT GAACCAGAAC CAGCGCGATC GCAACCTCGC TGCGTTCGAT
TCCGGCGATG TGCGTGTCAT GGTGGCCACC GACGTGGCCG CCCGTGGCAT AGACGTCGGC
GGCGTGGAGC TCGTGGTGCA GGTCGAGCCG CCGGCCGACC CGAAGTCCTT TGTGCACCGC
TCCGGTCGTA CCGCCCGCGC CGGCAAGGCG GGCGACGTGG TCACCCTCGT GCTGCCCGAG
CAGCGCCGCG AGACGCGCCG CTTGCTGAAC CAGGCCGGCA TCAAGACCAA GATGATCGAA
GTGACCCACG ATTCGCCCGA AGTGCTTGAG CTTGTGGGCG ACCGCGCCGA GCGCGTGGAT
GGTTGGAGCC TCGACAAGTC GCAGTCCGTG GGCAACCCGC GCAAGGGCAA GAACAGGGGC
GCCAAGAACG CGGCGGGCGA CGAGTCCGGC CGCGGCGGCA AGCGCAAGCA CAATCGCAAT
CGCAACCGTG ACGAGCAGAA CGTTGCCGAG ACCGAGTTCC AGCACGAGAA CGCAGGCGGC
GAGTTTGTTG CCGAAGGCGA GCCGCAGCGC AAGCACGGCG ACAAGGCCAG CAAGAAGGCC
GTGAAGAAGA ACCGCAACCG TGCGGAACGC CGCGCAGGCA TGAGCAACCC CGAGGCCGAG
CGCCGCGACT ATCTGTTCGA GCATGGCGAT GACCGCCGCG AGGAGCGCCG CAAGGGCGAC
CGTCGCGACG GATACGGCAA GAACCGGTAC GACGAGCGTC AGGACAATGG CCGCGGCCAG
TACGGCAAGA ACCGTCGCAA TGATCGGTAC GGCAAGGGCG ACAAGTTCGA TAAGCGCGAC
AGGGCCGGAT ACGGTCGCAA CGATGATTTC GGCAGCCGCA GGCACAATGC GGGCCGTGAT
TTCGAACGGT CCGATTCCCG CGATTTCGAG CGTCCGCGCA AGCCTCGCCG CAATGAACGC
AGCCACGAGG ATTACGGCTT CTCCTATGAC GAGCGCTCCC ATGACGGCCG CAGGCAGTCC
ATGCGCAACA CCCGTCAGGG CGAAGGCGGC AAGCGCATCC ATCGCAAGAA CGAGAACCGC
ATCGTACGCG ACGAGCGTTC AGAAGGTGCC AAGCGTCACG AACGCCGCAT GATCGCCAAA
TACGGCAACA CGGAAGGCCC GAACCGCCGT CATTCCAAGA AGAATCGCCA CAATGCGCCA
TTCCGTATGA AGTCTGGACG CCGTTAG
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| Protein sequence | MPRNNFDDRD DSADFQMNDS AESRPLTFGE LGVPGPLVRV LAADDKKTAF PIQADTLPDS
LAGRDILGRG RTGSGKTLAF SIPLVTRLGS YDSFGEIAME EFRKEIKRRK KASLEERRAD
DFLPHPRGLV LAPTRELANQ INDVLMPLAH TFGMNTTTVY GGVKYIHQIR DLKAGADIVV
ACPGRLEDLL RQQALTLSSV EVVVIDEADE MADMGFLPPV KRLLEQISPD AQHMLFSATL
DHGVDEVVNT FLHDPKVHEV DSATTEPDLM THHVFETTRG DKHELVRMLA SGEGRRILFT
RTKFQAKKLA KNLTQNGIPA AELHGNLNQN QRDRNLAAFD SGDVRVMVAT DVAARGIDVG
GVELVVQVEP PADPKSFVHR SGRTARAGKA GDVVTLVLPE QRRETRRLLN QAGIKTKMIE
VTHDSPEVLE LVGDRAERVD GWSLDKSQSV GNPRKGKNRG AKNAAGDESG RGGKRKHNRN
RNRDEQNVAE TEFQHENAGG EFVAEGEPQR KHGDKASKKA VKKNRNRAER RAGMSNPEAE
RRDYLFEHGD DRREERRKGD RRDGYGKNRY DERQDNGRGQ YGKNRRNDRY GKGDKFDKRD
RAGYGRNDDF GSRRHNAGRD FERSDSRDFE RPRKPRRNER SHEDYGFSYD ERSHDGRRQS
MRNTRQGEGG KRIHRKNENR IVRDERSEGA KRHERRMIAK YGNTEGPNRR HSKKNRHNAP
FRMKSGRR
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