| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0332 |
|---|
| Symbol | holA |
|---|
| ID | 6362725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | + |
|---|
| Start bp | 411491 |
|---|
| End bp | 412462 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642679480 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001954276 |
|---|
| Protein GI | 189439195 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAAAA CAGCAGCGAA CGTACCGGTA ACCGTGGTGC CCGGAGGCGA CTCGTATTTG
AACGACGCGC GCACCAAGGC ACTGTGCGCA CAAGCGTTGA AGGCGCGACC CGACGCCGAA
CTCATCGAGC TCGACGCCAC ATCGGCCGAC CAATATGCCT TCGATGAAGC CGTCAGCCCA
TCGTTGCTTT CCGACGTTGC CGTGGTCAAA CTCGTCAACC TGCAGAATGC CGACGAAAAG
CTCGCCGAAG CTTTGGTGAC GTACACCAAG CAGGCCGCCA AGGATCCGAA CGGCTCCAGC
GTGGTGATCT GCCAGCACGA GGGCGGCGTC AAAGGGCGCA AGATCATCGA CCAACTGGTG
AAAGCCGGCG CTCGCAAAGA GGACGTGCCG GATTTGAAGA AACCGGATGC CCAACTCAAT
TTCGTACTCG GAGAATTCGA GAAACGCGGT CGTAGAGTCG AACCGATGGC CGCGCAGCAG
CTGGTATCCG TGCTCGGCGG CAAAACCGGC GAACTCGCCG CCATGTGCGA GCAATTGTGT
TTCGACTTTG ACGATAATCC GATGGGGCTC GACTGTGTCA ACCAGTATTT GACCGCCAAT
CCGCAGGTCA CCGGTTTTGC CGTGGCAGAC AAGGCCGTGG AAGGCAAAAC CGCCGAAGCC
ATCGTCATGA TGCGTGCAGC TGTGGAACAA GGGACCGATC CCATCGCGTT GATCGGCGCG
TTGGCCATGA AGCTCCGTAC CATTGCCAAA GCCTCGGCGG TCCGGGCCGG CACGATTTCA
CAGGCCGAAG CGAAAACCAA TCCGTGGGTG CTGAAGAATG CGATGCGCCA ACTTGGCGGC
TGGACTTCGG CAGGACTCGC GCATTGCATC CGTATGCTCG CCTGGGCGGA TGAGCAAAGC
AAAACGAACG GCGGCGACCC GGTATATGCG CTGGAACGCT GCATTGAAGA CATCAGTCAT
AAAGGTCGGT AA
|
|---|
| Protein sequence | MAKTAANVPV TVVPGGDSYL NDARTKALCA QALKARPDAE LIELDATSAD QYAFDEAVSP
SLLSDVAVVK LVNLQNADEK LAEALVTYTK QAAKDPNGSS VVICQHEGGV KGRKIIDQLV
KAGARKEDVP DLKKPDAQLN FVLGEFEKRG RRVEPMAAQQ LVSVLGGKTG ELAAMCEQLC
FDFDDNPMGL DCVNQYLTAN PQVTGFAVAD KAVEGKTAEA IVMMRAAVEQ GTDPIALIGA
LAMKLRTIAK ASAVRAGTIS QAEAKTNPWV LKNAMRQLGG WTSAGLAHCI RMLAWADEQS
KTNGGDPVYA LERCIEDISH KGR
|
|---|
| |