| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0141 |
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| Symbol | rluA1 |
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| ID | 6363092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 167030 |
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| End bp | 167806 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642679281 |
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| Product | 23S RNA-specific pseudouridylate synthase |
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| Protein accession | YP_001954085 |
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| Protein GI | 189439004 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.230336 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGGCGGAGG AACAGGCCGA GCCTGAGCCT ATCGCAACTG ATATGGCCGT TGTCTACGAA
GACGATGATG TCGTTGTAGT CGATAAGCCT GTAGGCGTGG CGGCGCATGC CTCGGTTGGC
TGGACCGGTC CAACCGTGCT CGGATCACTG CGTGACCGCG GCGTGCATAT CACTTCCTAT
GGTGCGGCCG GGCGTGAGGG CATTGTTTCT CGCCTTGATG TAGGCACTTC CGGCTTGATG
TTGGTGTGCA AGTCCGACCT TGCGTACACC GAGATGCGTC GGCAGTTCGC CGAGCATGAG
GTAAAGAAAA CCTATCATGC GCTCGTGCAG GGTGGTCTTA AAGAGAACAA AGCAACCATT
GAGGCACCGA TCGGGCGCGC CAAAGTGTCC GATTTCCGCT TCTGCGTGAC TCCGGCCGGC
AAACCGGCCG TTACGCACTG GGATGTGCTG GAGCGTTTCG GCCATGAGGC CACTCTGGTA
TCCGTGAATC TGGAGACCGG ACGTACTCAT CAGATTCGCG TGCATTTCTC CTCGATTGGG
CATCCCCTGT GCGGTGACCC CATGTATGGT GCCAATCCGG TGCTATCTGA GGCCTTGGGA
CTTGACCGGC AGTGGCTGCA CGCCATGAAG CTCGAATTCC GTCATCCCCG CACCCGCGTC
TGGACCACGG TCCGGTCCCA GTACCCGGCC GACTTGGCTG CCGCCCTCGA TGCCATGCGT
GCCCGACATA TCGAACCCGC TGAACCTGCC GAATATGCCG AAGTTCTGGT GGACTAA
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| Protein sequence | MAEEQAEPEP IATDMAVVYE DDDVVVVDKP VGVAAHASVG WTGPTVLGSL RDRGVHITSY
GAAGREGIVS RLDVGTSGLM LVCKSDLAYT EMRRQFAEHE VKKTYHALVQ GGLKENKATI
EAPIGRAKVS DFRFCVTPAG KPAVTHWDVL ERFGHEATLV SVNLETGRTH QIRVHFSSIG
HPLCGDPMYG ANPVLSEALG LDRQWLHAMK LEFRHPRTRV WTTVRSQYPA DLAAALDAMR
ARHIEPAEPA EYAEVLVD
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