| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1354 |
|---|
| Symbol | |
|---|
| ID | 6354547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chlorobium limicola DSM 245 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010803 |
|---|
| Strand | - |
|---|
| Start bp | 1449187 |
|---|
| End bp | 1450830 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642668964 |
|---|
| Product | Nucleoside phosphorylase-like protein |
|---|
| Protein accession | YP_001943394 |
|---|
| Protein GI | 189346865 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0775] Nucleoside phosphorylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.116698 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTACC AAGAAATAAA ACTTGAAGAT CTTATAAAGA TAGTTCAGTG TGATATTGCT
TTAATTGTTA CTGCTACAGA TACAGAAACA GAAGCTACAC ACAAAAAGCT TTCACCTCTA
AATGGTTATT CCAATATTCT ACAAGCATAT GACGATGCTA ATACATATTA TGGAGGTGTC
TTTGGGAAAT ATAAAGTTGT ACATGTACAA AGTAATATGG GGGCGATAGG AAGGGATAGT
GCTATAATGA CTATTTCAAA TGCAATCAGG ACTTTATCTC CAAAGTTTGT GATAATGATA
GGTATTGCTT TTGGTGTTGA TGAAAAAAAA CAGAAAATCG GAGATGTTTT AGTTTCTGAA
GGAGTATTGC CATATAACAA CAAAAGAGTT GGTGAAAAAA CAATTCAACG AGGTCTGCCT
GCTCCGGCTA GCAAAATTCT TTTAAATAGA TTTAAGTCTC TTAAAACATG GCAATATCTA
ATAAATGATT CGATTTTTGC AGAAAAAATA ATATCACCAA TTTTGTCTGG TGAGGAGTTA
ATTGATAATA TTGATAGACG AAATGAACTG ATTAAGGAAT TCCCTGTTTC GAAAGGTGGA
GAAATGGAAG GTGCCGGTCT ATTTGCAGCA TGTGATGGAA ATGTAGATTG GATTCTTGTT
AAGGGAATAT GTGATTTTGC TGATGGAAAT AAAAGTATGA ATAAAAAGGA AAATCAAGAA
ATTGCAATTA ATTCAGCTTT AAGTTTATGT CTTGAGCTTT TCAACTCATC TTATGCGTTT
TCAGTTTTAG GGCTTACGCC TATTAAGGAT AAATCAGATG TTTTATATTC ATTTGATCAA
ATGTTTGTAG ATGAAATTCT TTTTGAGATT TATAATAAAA CAAGTGATCG CTATTATGTT
ATAAGAGAGC AGGATATGTT ATTCAACAGA ATCATGGAGC AGTATTGTAT CTGGGTGCAT
GGCATTTCTG GGTGCGGAAA AACTAATTTG ATATTAAGAA GTCTTATATT AAATGAGGTT
GATTATACTC CGATTTCATT GGCTTCATGT ATTGATCTTA ATGTTGTCGA ATTATTTGGA
CAAATTTTGT ATGATTTAGA AATAAAGTTT GGAAAACTTC AAAATCCTTT ATTTAATGAT
ACATTTTCAA ATATATGTAG AAATATTCTT TTTTTATTGG AATATAATTG TGCGTATAAA
AAACATGTTG TTTTTATAGA AGAAATTCCT ATTTCAAGCG AAAATGATTA CAAGGAATTT
GTCTCACATT TTTTCTCTTT GCTTATTTCT AAGAAGCAAA ATCATGGCTT AAATAAAGTA
AAATTTGTAC TATCTTCAAT AAAAAATCCA ACAGATCATA TTAAACCTAT TCAGCAAAAA
ATACATCAAC AGGTTAAGTT TATTGAATTA AAGAATTGGG ACTCTGATGA TATCGATAAG
TTGATTGATT TGATATGTGA ACAGCTAAAT ATTAATCTTG ATGAGGACTT AGTTGTTGAA
CTTAAATGTA AGTCAAAAGG TTCGCCAAGG TTTGTGAAAA AATATTTTAG AAATATTTTA
GCATATTATA TATCTGATAA AATAAACTAT AAAGAAGTGA TATCTGAAAC CGAACGAGAA
CTTAAGAATT TCCATTATGA ATAA
|
|---|
| Protein sequence | MGYQEIKLED LIKIVQCDIA LIVTATDTET EATHKKLSPL NGYSNILQAY DDANTYYGGV
FGKYKVVHVQ SNMGAIGRDS AIMTISNAIR TLSPKFVIMI GIAFGVDEKK QKIGDVLVSE
GVLPYNNKRV GEKTIQRGLP APASKILLNR FKSLKTWQYL INDSIFAEKI ISPILSGEEL
IDNIDRRNEL IKEFPVSKGG EMEGAGLFAA CDGNVDWILV KGICDFADGN KSMNKKENQE
IAINSALSLC LELFNSSYAF SVLGLTPIKD KSDVLYSFDQ MFVDEILFEI YNKTSDRYYV
IREQDMLFNR IMEQYCIWVH GISGCGKTNL ILRSLILNEV DYTPISLASC IDLNVVELFG
QILYDLEIKF GKLQNPLFND TFSNICRNIL FLLEYNCAYK KHVVFIEEIP ISSENDYKEF
VSHFFSLLIS KKQNHGLNKV KFVLSSIKNP TDHIKPIQQK IHQQVKFIEL KNWDSDDIDK
LIDLICEQLN INLDEDLVVE LKCKSKGSPR FVKKYFRNIL AYYISDKINY KEVISETERE
LKNFHYE
|
|---|
| |