| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Clim_1116 |
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| Symbol | |
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| ID | 6355758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlorobium limicola DSM 245 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010803 |
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| Strand | + |
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| Start bp | 1216936 |
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| End bp | 1218390 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642668733 |
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| Product | RNA polymerase, sigma 54 subunit, RpoN |
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| Protein accession | YP_001943164 |
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| Protein GI | 189346635 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAGA TACGGCTACA ACAGAAACAG AAAGCGATTC TGTCTGCACA GCAGATACTC
AGCAGTCAGC TTCTCCAGCT TCCGCTTCTC AATCTCGAAC AGAGGATATA TGACGAGCTG
CAGGAAAATC CCATGCTTGA GCTTATCGCT GAAAGCAAGG ATACCGCCGG GGATATCGCT
TCAGAAGACG ATAGTTCCCC GGGTGACGAT ATGTTCGGAA CGCTGGAACG ATTCAGCAAA
AGTTCGATGA AGGAGCCTCG GCAGGTTAAC ACCTCCAGGG AAGATTCCGA GGGGCGCCTG
AACTTTACTC ACGAAAGCGC ACCGCAGGAA CGATTTTTTC AGGCGGTACA GCACGACAGT
TTCGATGAGC AGCTTCTCCG GCAGCTTGCA ATGCAGGAGG GCATTGGTGA ACGGGAGGTC
ATGATTGCCA TAGAGATTCT CGGCAACCTC GATCATGATG GCTATCTTGC AGAGGATAAC
GATGTCATTC TTGCCGGTCT GCACTCCAGC GGACTGGATG CCGATGAACA TGAGATGGAA
AAAATTCTGC GCAAGATCCA CTATCTCGAT CCTCCCGGTA TTGCCGTACG GGATCTGAGA
GAACGGCTGC TTGTACAGCT TAAACTGAGG GAAGCGTCCT CTGAACAGGA GATATACCGG
ACTGCAGTTC GTATTCTTGT GCAGTTTTAC GAAGATTTTC TGCACCGGCG ATATGACCGG
ATTCTGAAAA AACTCGATCT CCCAAAAGAT CATGTCGAAG AGGCTCTTGG GATCATTACC
TCACTTGATC CGCATCCTGT CGAGCTGTTT CACGATGAGG GAGGGCATTA CATCACCCCT
GATTTTATCG TGACCTACGA AAACGGTGAG CTTACCGCCA TGCTTAACGA CCGGAGCTCG
CTTTCGGTCA AGGTTTCGGA ACAGTATCAG GGGATACTCA AAAACCGCAA GGCGCCAAAG
GATGAAAAGC GGTTTATCCG CTACAACCTT ACGAGGGCGA ACGATTTTGC CGCAGCCATA
GCCATCAGGC GCCAGACGCT TCTGAAGGTG ATCGAATCGC TTATGAAAGC GCAATACGCA
TTTTTCGTTT CCGGTCCGGA ACATCTTGTT CCTCTTGGAA TGAAAGCCAT TGCCGGCGAT
ACCGGTCTTG ATATTTCAAC CATCAGTCGG GCGGTGAACG GCAAGTATGT ACAGACCCGC
TTCGGAGTTT TCGAACTTAA ATACTTCTTC AGCAGTTCGC TTGCTACCGA CGAAGGCGAC
GACATGTCGA GTAAAATCAT CCGGCAGTAT ATCGGTGAAA TGGTGAAAGC GGAGAATCCC
GACAAACCGC TCAGTGACGA TCTGATAACC GGCCAGCTCA AGGACAAGGG GATCAACATA
GCCCGGAGAA CGGTTGCAAA ATATCGTGAA CAAATGCAAA TTCCAGTTGC AAGGCTAAGG
AAAAAAATAT TTTAA
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| Protein sequence | MAEIRLQQKQ KAILSAQQIL SSQLLQLPLL NLEQRIYDEL QENPMLELIA ESKDTAGDIA
SEDDSSPGDD MFGTLERFSK SSMKEPRQVN TSREDSEGRL NFTHESAPQE RFFQAVQHDS
FDEQLLRQLA MQEGIGEREV MIAIEILGNL DHDGYLAEDN DVILAGLHSS GLDADEHEME
KILRKIHYLD PPGIAVRDLR ERLLVQLKLR EASSEQEIYR TAVRILVQFY EDFLHRRYDR
ILKKLDLPKD HVEEALGIIT SLDPHPVELF HDEGGHYITP DFIVTYENGE LTAMLNDRSS
LSVKVSEQYQ GILKNRKAPK DEKRFIRYNL TRANDFAAAI AIRRQTLLKV IESLMKAQYA
FFVSGPEHLV PLGMKAIAGD TGLDISTISR AVNGKYVQTR FGVFELKYFF SSSLATDEGD
DMSSKIIRQY IGEMVKAENP DKPLSDDLIT GQLKDKGINI ARRTVAKYRE QMQIPVARLR
KKIF
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