Gene Clim_0963 details

Gene Information

• Locus tag: Clim_0963
• ID: 6355412
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chlorobium limicola DSM 245
• Kingdom: Bacteria
• Replicon accession: NC_010803
• Strand: -
• Start bp: 1053110
• End bp: 1055026
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 642668587
• Product: alpha-amylase family protein
• Protein accession: YP_001943018
• Protein GI: 189346489
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0366] Glycosidases

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCATACCA CTCATCTTGA AAGCGTCTTT CATCTTCTCC GGCAGCTCCC ATCACTGCCT 
GAAGATCAGG CCTACCATAT CCCGCAACTC TGGACAAGCG ACCTTCCGGG AACTGCCGCA 
GTGCAGCCCG GCAGATATTA CTCGGACATC ATCGGCAGCA TACTCGGGCA ACCCCGAACC 
GATTCTGCAG ATACAGAACG GAAAAGCCGC TGGAGCGAAT CGGCTGTCGT CTATAATCTC 
TTTGTCAGGC TGACCGCCGC ATTCGACCAT AACCGAAACG GAACAGTCGG AACAGAGCCT 
CTGGAAAGCG GCTTCAGAGA GACCGGAACC CTTCTCAAGG CAATCGCCCT GCTTCCCTAC 
ATAAGCAGAC TGGGTGCGAA TACGGTTTAC CTTCTGCCGC TGACCGCCAT AGGCAAAGCG 
AACAGAAAAG GCAATCTCGG TTCACCTTAT GCCGTCAAAG ACCCCTTTGC AATCGATCCC 
ATGCTTGACG AACCGGCACT TGGTCTTGGC GCGGATTTCC TTCTCAAGGC GTTTGTGGAA 
GCGGCGCATC TCCTCGGAAT GCGGGTCGTC TTCGAATTCG TCTTCAGAAC CGCAGCAATC 
GACAGCAGTT GGGTGACTAC ACACCCCTCA TGGTTTTACT GGCTTTCCGG AACCTCCGGC 
GACAACCGGT ACGGCCCTCC GTTTTTCGAC CAGGAAACCC TGAATGCCAT CCATGAAAAA 
ATCGACAGAC ACGACCATCA AAACCTTCCG GCTCCGTCCG GAGAGTATAC CGGTATGTTC 
GTCCCTCCGC CGACATCCCT TGCCGAACGT AACGGCAGCA TGGAAGGTAT CGGAGAGAAC 
GGAGAACCCT GCCATATAGC AAGCGCTTTT TCAGACTGGC CGCCTGACGA CCGGCAGCCG 
CCATGGACAG ATGTTACCTA TCTGAAAATG CACAACCATC CGGACTTCAA CTACATTGCC 
TACAACACCA TCAGAATGTA TGATGCAGCC CTCGACAACC CTGATACCAT CAACAGGGAA 
CTCTGGGATA TCATTTTATC CATCATTCCG TGGTATCAGG AACATTACGG CATAGACGGG 
GCTATGATCG ACATGGGACA TGCACTTCCC GGCGAACTCA AACGGATGAT TGTCGCATCC 
GCGCGCAAAA GCATGCCCGA CTTCGCGTTC TGGGACGAAA ACTTCGACCC TACCCCTGCA 
GTGCGGGACG AGGGGTTCGA TGCGGTATTC GGCTCGCTCC CTTTCGTTAT CCATGACCCG 
GTATTTATCA GAGGACTCCT GAACTATCTC AACAAAACCG GTGTGGCCCT TCCTTTTTTC 
GGAACCGGAG AGAATCACAA CACGCCGAGA GTCTGCCACC GGAACCCCTG CAGCGAAACC 
GGCAGGAATC ATGCGATGTT CATTTTCACC CTCAGCGCCA TCCTGCCGAC AATACCCTTT 
CTTCACTCGG GCATGGAGAT CTGTGAGTGG CATCCCGTAA ATCTCGGTCT CAATTTCGAC 
GAAAACGACC GTTCCGGATT CCCTGCAGAA ACACTCCCGC TCTTCAGCAC GTTCAGTTAC 
GACTGGGAAA CGACAAACCG CGTCGAACCG CTCGTGCGAT ATATCAGAAC CGTTCTCTCC 
ATCAGGAAAA AGCATGCGGA ACTTATCCGG TGCGGCGACA AAGGTTCCAT CGTCCTTCCC 
TACGTCACCG AACCGGAGCT GCTCGCCGTT TTGCGGAAAA ACGGAACACA ATCCCTGCTC 
TTTATCGGCA ACAGCAACGG CGAAACGCCC AAAAGCGGGG TCATCGAGTT TGCGTTCCCT 
GAAGGCACAC TTTTCGACCT GATCGAAGAA CGGAACTACA CGGTATCCGA CCATAAACTC 
AACATTTCCT GCAAGCCCGG CCAGTGCCTG CTTTTTGAAC TGCCGCAACA GAATTAA 

 

Protein sequence

MHTTHLESVF HLLRQLPSLP EDQAYHIPQL WTSDLPGTAA VQPGRYYSDI IGSILGQPRT 
DSADTERKSR WSESAVVYNL FVRLTAAFDH NRNGTVGTEP LESGFRETGT LLKAIALLPY 
ISRLGANTVY LLPLTAIGKA NRKGNLGSPY AVKDPFAIDP MLDEPALGLG ADFLLKAFVE 
AAHLLGMRVV FEFVFRTAAI DSSWVTTHPS WFYWLSGTSG DNRYGPPFFD QETLNAIHEK 
IDRHDHQNLP APSGEYTGMF VPPPTSLAER NGSMEGIGEN GEPCHIASAF SDWPPDDRQP 
PWTDVTYLKM HNHPDFNYIA YNTIRMYDAA LDNPDTINRE LWDIILSIIP WYQEHYGIDG 
AMIDMGHALP GELKRMIVAS ARKSMPDFAF WDENFDPTPA VRDEGFDAVF GSLPFVIHDP 
VFIRGLLNYL NKTGVALPFF GTGENHNTPR VCHRNPCSET GRNHAMFIFT LSAILPTIPF 
LHSGMEICEW HPVNLGLNFD ENDRSGFPAE TLPLFSTFSY DWETTNRVEP LVRYIRTVLS 
IRKKHAELIR CGDKGSIVLP YVTEPELLAV LRKNGTQSLL FIGNSNGETP KSGVIEFAFP 
EGTLFDLIEE RNYTVSDHKL NISCKPGQCL LFELPQQN