| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1738 |
|---|
| Symbol | |
|---|
| ID | 6332648 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | - |
|---|
| Start bp | 1795011 |
|---|
| End bp | 1795850 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 642658013 |
|---|
| Product | apurinic endonuclease Apn1 |
|---|
| Protein accession | YP_001931889 |
|---|
| Protein GI | 188997638 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0648] Endonuclease IV |
|---|
| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000000000624135 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAACA TTGGAACTCA TGTATCATCT TCAAAATCCT TAGACCTTGT TTTTGAAAGG
GGAAAAGAAG TAGAAGCTTC ATCAATTCAG TTTTTTATAA GGTCTCCAAG GTCTTGGGCT
TGGATAGAAA GAACTGATGA AGAAAAAGAA AGATTTCTAC AAAAGAAAAA TGAGTATAAA
ATTCATCCGT TAGTAGTACA TGCTTCATAT CTTTTTAATT TAGCATCCTT TGAAGAAGAA
TTATACAAAA AATCCATAGA AAGCGTTATA CAGGAGTTGA AGCTTTGTGA AGAGTTAAAA
ATTGATTATT ATGTAATTCA TGCAGGAAAA TCAAAAGGAA ATCCAAAAAA GCAGGCGATA
GATAGGATTT TAAGAGCTTT TGAAGAGATA TTTAGTAGAT TAAATCTAAA AAATACAACA
TTTTTAGTTG AAACGTTGGC AGGTCAATCC GGAGAAGTTG GAGCAACATT AGAAGAAGTT
TATACACTAA TTGAACCTTT TGAAAATGAA AAAATAGGTG TTTGCCTTGA CACTTGCCAT
ATATTTGCAT CCGGGTATCA GATAAACACC GACGAAGGAT TTAATAGCTT TAAAAAAGAG
CTTATAGATT ATAATCTCTT AGAAAAGACA AAAGTTATAC ATTGTAATGA TTCTAAAGCT
CCTTTTAACT CTAAAAAAGA TAGACATGAA CATATTGGAA AAGGCTTTAT TGGGTTGGAG
GGTTTTAGAA TATTTTTAAA TGATGATGAT TTTAATAAAC TTCCTTTTAT CTTAGAAACA
CCAAAAGAAG GAGATATGGA CAGGGTAAAT ATTAATTTGT TAAAATCTTT AATAAAGTGA
|
|---|
| Protein sequence | MVNIGTHVSS SKSLDLVFER GKEVEASSIQ FFIRSPRSWA WIERTDEEKE RFLQKKNEYK
IHPLVVHASY LFNLASFEEE LYKKSIESVI QELKLCEELK IDYYVIHAGK SKGNPKKQAI
DRILRAFEEI FSRLNLKNTT FLVETLAGQS GEVGATLEEV YTLIEPFENE KIGVCLDTCH
IFASGYQINT DEGFNSFKKE LIDYNLLEKT KVIHCNDSKA PFNSKKDRHE HIGKGFIGLE
GFRIFLNDDD FNKLPFILET PKEGDMDRVN INLLKSLIK
|
|---|
| |