Gene SYO3AOP1_1247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSYO3AOP1_1247 
Symbol 
ID6331500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSulfurihydrogenibium sp. YO3AOP1 
KingdomBacteria 
Replicon accessionNC_010730 
Strand- 
Start bp1292828 
End bp1293496 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content29% 
IMG OID642657532 
Productpolysaccharide deacetylase 
Protein accessionYP_001931412 
Protein GI188997161 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC TAACATTCAT CTTATTATTT TTGATATCTT CTTTTTTATT CTCAAATGCT 
GAAGTAATCA CAACGTTAAA AACAGATGAT AAAGTTGTTG CTCTTACATT TGATGCCTGT 
GAGACTAAAA CACCATCATA TTTAGACCAT AAAATAATTG ATTTTTTGGT TTCTCAAAAA 
ATTCCTTTCA CACTGTTTGT AAGTGGAAAG TTTATTGAAA GAAATTTTCA GGATTTAAAA 
AATCTTTATA ATACTGGTTT GGTCTCGATT CAAAATCATT CTTACAATCA TAACAATCAT 
ATGAACCTTC TAAACGAAGA AGAGATTAAA GAAGATGTAC TGAAAAATGA AAATTTAATC 
ATTGGGATAA CGGGAATTAA ACCAAAATAT TTTAGGTTTC CTGCTGGCAA TTATAATGAA 
AGAGCTTTAC GCTTAGTAGA AAGTTTAGGT TATAAAGTTA TTCATTGGAC TTTTCCAAGT 
GGCGACCCGG ATAAAAAAAT AACAAAAGAG ATGTTGATAG ACCATGTGAT AAGAAATACA 
AAACCTGGCT CTATTTTAAT ATTCCATGCA AATGGTAGAG GTTACAAAAC AGGCGAAGCT 
TTACCCGAGA TTGTTAGAAT TTTAAAGCAG AAAGGTTATA GATTCGTTAG ATTAGAAGAT 
TATTTATAG
 
Protein sequence
MKKLTFILLF LISSFLFSNA EVITTLKTDD KVVALTFDAC ETKTPSYLDH KIIDFLVSQK 
IPFTLFVSGK FIERNFQDLK NLYNTGLVSI QNHSYNHNNH MNLLNEEEIK EDVLKNENLI 
IGITGIKPKY FRFPAGNYNE RALRLVESLG YKVIHWTFPS GDPDKKITKE MLIDHVIRNT 
KPGSILIFHA NGRGYKTGEA LPEIVRILKQ KGYRFVRLED YL