| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0977 |
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| Symbol | trmE |
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| ID | 6332772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1009611 |
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| End bp | 1010954 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 642657266 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001931152 |
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| Protein GI | 188996901 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000000239803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACAAAG ATACAATCGT AGCAAATGCA ACCCCACTAA TTCCATCAGC AATTTCAATA
GTTAGGATTA GTGGGGATAA AGCTTTAGAA ATAGGTAGAA AAATATTCTC TCTGCCGGAA
AACATAACTC CAAGAAAAGT TTATTTTGGT AAAATTTTTA ACAATAAAGG TGAAATTATT
GACGAAGGTT TATTCGTATA CTTTCAAAAG CCAAAAAGCT TTACTGGTGA AGACCTTGTA
GAGATTTACC CCCACGGAAG CGTTCCTGTT GTAAAAAGCA TATTAGAAGC TTGTTTTATG
TATGGTGCAA GATTAGCAAG ACCGGGTGAA TTTACAGAAA GAGCTTTTTT AAATGGAAAA
ATTGATCTAT TACAAGCAGA AGCTATAGCA GACCTAATCA ATGCAAAATC TGAAAGAGCA
GCAAAAATTG CAGTCTCTAT ACTGGAAGGA AAATTATCTA AACAGATAAA CATTTTAAGA
GAAAAGCTGA TAAATCTTAT ATCTTTAATA GAAGCTGAGA TCAATTTTCC TGAAGATGTT
GAAGAGATAG ACAGTAGTCT TATTATTTCT CAGTTAGAAG AGGTAAAATC TCAAATAGAT
AAACTTTTAG CAAGCTATAA AAAAGGAAAT CTTATAAAAG AAGGTATTAA GCTTGCAATC
GTTGGAAGAC CAAATGTTGG AAAATCCTCT TTATTTAATG CACTTGTTGG CTATGAAAGA
GCAATAGTTT CTGAAATACA AGGAACTACA AGAGATTTTA TAGAAGAAAG CCTTAAAATA
AAAGATATTC CAGTTATTTT ACTTGATACA GCGGGGCTTA GAGATACAGA AGATAAAATA
GAAAAAATAG GCATAGAAAA AGCACAAGAG AAAATAAATG AAGCTGATAT TATCTTATTT
GTGATAGATG CATCCTCTGG TTTTACAGAA GAAGATAAAA AAATTTATGA TAAAATTAAA
GATAAGCCAC ATATAATTGT AGTAAATAAA TCTGATTTAA ACAACAAACC TATTGATTTT
TTTGAAAAAT ATGATAACAT TGTATATACA AGTATTATAA ACAATCAAGG AATAAAAGAG
TTAGAAGAAA AAATCATAAC ATCCTTAGGA ATCATAGAAA AAGAAGATGA TCTCTTCATA
AACCTAAGAC AATCGACTTT ACTAAAGCAA GCAAAAGAAA AAATAGAGGA GATAGAAAAT
CATATTAACT ATTTAATCAA TAATAAAGAA ATATTAATGA TTTACATTCA AGAGGCTTTA
AATTACTTAG ATGAAGTCGT AGGGGCTATA TCAACAGAAG ATGTTTTAGA TAATATCTTT
AGTAAATTCT GCATAGGTAA ATAA
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| Protein sequence | MNKDTIVANA TPLIPSAISI VRISGDKALE IGRKIFSLPE NITPRKVYFG KIFNNKGEII
DEGLFVYFQK PKSFTGEDLV EIYPHGSVPV VKSILEACFM YGARLARPGE FTERAFLNGK
IDLLQAEAIA DLINAKSERA AKIAVSILEG KLSKQINILR EKLINLISLI EAEINFPEDV
EEIDSSLIIS QLEEVKSQID KLLASYKKGN LIKEGIKLAI VGRPNVGKSS LFNALVGYER
AIVSEIQGTT RDFIEESLKI KDIPVILLDT AGLRDTEDKI EKIGIEKAQE KINEADIILF
VIDASSGFTE EDKKIYDKIK DKPHIIVVNK SDLNNKPIDF FEKYDNIVYT SIINNQGIKE
LEEKIITSLG IIEKEDDLFI NLRQSTLLKQ AKEKIEEIEN HINYLINNKE ILMIYIQEAL
NYLDEVVGAI STEDVLDNIF SKFCIGK
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