| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0361 |
|---|
| Symbol | |
|---|
| ID | 6331716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | + |
|---|
| Start bp | 377261 |
|---|
| End bp | 378379 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 642656652 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001930560 |
|---|
| Protein GI | 188996309 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00000675189 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTTG ATGAAATTCT TACTAAAGCT GTAAAGTTAG GTGCATCAGA TATACATTTA
AAAGTTGCCA GTAAGCCAAA GGTCAGAATA AAGACAATTC TTCAAACTTT GGATGAGTAT
AATCCCATTA CTGTTGAAGA TATGACAAAT TTTATATCTA AAATTCTTGC AAAATCCGAA
AATAAAAAAG CTGAGCTTAT AAAAAATGGA GAGGTTGATA TTTCTTATTC TATCCCAACT
GTAAGCAGGT TTAGGGTAAA TATTTATAGA CAAAGAGGAA CTTATGCTAT TGCTTTAAGA
GCTTTAAAAA CAAACATTCC AAGATTTGAA GAACTTCTTC TGCCAGAAGT AATAAGAAAA
ATAGCTGAAG AAGCAAGGGG GTTAGTTCTT GTTACTGGTC CAACAGGTTC AGGTAAATCC
ACAACTTTAG CATCTATGTT AGATTACAGA AACGAAATTT TCGAGGAAAC TATCATAACA
ATAGAAGACC CTATAGAATA CGTTTTCAGA GATAAAAAAG CATATATTGT TCAAAGAGAG
GTAGATTTGG ATACACGAGA CTTTAGCACT GGCTTAAGAG CTGCTTTACG TGAGGACCCA
GATGTTATTA TGGTTGGTGA GATGAGAGAT TTAGAAACAA TTCAAACCGC TTTAAGAGCT
GCAGAAACTG GACACTTCGT TTTATCCACA TTACACACTC AAGACGCGAA AGACACAATA
AGCAGGATAA TAAATATGTT CCCTGGAGAA GAACAGAATC ATTTAAGGAT ACTTTTAGCT
GCCGTATTAA AAGCTGTTAT ATCTCAAAGA TTAATACCAA GGAAAGATGG TAAAGGAGTT
GTTCCAGCTG TTGAGGTCTT AATCAATACT GGAGCAATAA CAGAATGTAT TATGGATCCA
GATAAACTCC TTTTAATAAA TGATTATATG GAAAAAGGGA AAAAAATGTA CGGAATGCAA
ACTTTTGACC AAGCAGTTGT AGACCTTTAC AATCAGGGAC TTATTTCTTA TGAAGATGCA
CTCATGCATG CTTCAAATCC ATCGGATGTT GAATTAAAGA TAAAAGGTAT TACTGCGGGA
GAAGATGAAG GATTAGATTT TGGTGGATTC ACGTATTAA
|
|---|
| Protein sequence | MELDEILTKA VKLGASDIHL KVASKPKVRI KTILQTLDEY NPITVEDMTN FISKILAKSE
NKKAELIKNG EVDISYSIPT VSRFRVNIYR QRGTYAIALR ALKTNIPRFE ELLLPEVIRK
IAEEARGLVL VTGPTGSGKS TTLASMLDYR NEIFEETIIT IEDPIEYVFR DKKAYIVQRE
VDLDTRDFST GLRAALREDP DVIMVGEMRD LETIQTALRA AETGHFVLST LHTQDAKDTI
SRIINMFPGE EQNHLRILLA AVLKAVISQR LIPRKDGKGV VPAVEVLINT GAITECIMDP
DKLLLINDYM EKGKKMYGMQ TFDQAVVDLY NQGLISYEDA LMHASNPSDV ELKIKGITAG
EDEGLDFGGF TY
|
|---|
| |