| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0176 |
|---|
| Symbol | |
|---|
| ID | 6331374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010730 |
|---|
| Strand | + |
|---|
| Start bp | 193169 |
|---|
| End bp | 194839 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 642656454 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001930375 |
|---|
| Protein GI | 188996124 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAGA ATTCATCTCT AATCAAAATT ATGTATCTTC TAATGCTCTT TCTTTTTTCC
AATTCCTACG CACAAATAGA TGAAGTAGTA AAGATTTATA AATCAGATTT TGAGCAGATA
GATTTAGATA ATTCTTATGA TTTAATCAAG AAAAATCAAA GCTTTGCAAT CTCAAGCTAT
ACAGCTTTAA AAATAGCTTC TTTTTTATCC TATCAACAAG ATTATAAAAT AACCTTTAAA
TTCATTCAGC TTGTAGATGT AAACGCATTT TTAGAAGAAG ATAAGCCTTT TTATCTTTAT
GTTTATGGAA CTATTTTAAA AAACCTGCAA GATTCAAAAT ATTTAGACAT ATTTAAACAG
CTTGTACAAA ACTACTGCCA CAGCTACTAT GGTTATAAAA CATACTTAGA AATCTACCCA
TATCTAACGG AGAAAGAAAA ATACAACGCC TTAGACACAT GCTTAAAAAA TAAACATTAT
GAAAAAGTTA AAAATCTATT GTTTACTCTA AAAGATGAAA ACGCAGTAAA TTACTATCTT
TTAAGTATTT CTCAAGACAA AGAGTTTTAC TTTAATCAGA TATCAAAAGA TTCAGAATTT
TATCTTAAAG CATTAAGTAA AATGAGCCAT TTAAATCCTA TATACGAACA AGAGTATTTA
AGTGCTTTGC TTTTAAAAGA TGATGTTAAA ACATTTATAA ACTTTATAAA AAATAAAGCT
TTAAAAGCCT TTTATAAAGG AGATTATAAC AGCTTTCAAA AATACTATGA AATGTTTTAC
AGCTTTAACG ATAAAGAAGA CAGTGATTTA GAATGGCTAA AATTTTTGTA CTATTACAAG
TCTAAAGATT TAGACCTTGC AAAAACTAAG CTTTTAAGCT ATAAAAAATT CTCAAATGAT
CCGTATCAAA TAGAATATTG GAGTAAGCTA ATAGAAAACA AAAATATAAA CGAGATAAAT
ATTAAAGATA GCTATAAAGT CTCAGAATTT ACGCCATATT TAAGTTTAAT CGTGTACAAG
ACAGGTAAAA GCATAACCAT AAAAAAAGAA AATACTTGTC CTAACAAATA TGGAGAGATA
TCAGAGATTT TAAATAAGCT AAAAAGTATT GACTATAAAT TAGCTTGGAT AGAAGGGGTT
TATCAAGTTA AAAAAGGAAA ATGTGAGGAA GTTTATTCAG TATTGCCGGA AGCCGGGGTT
AAATGCTTTA ATCAAATTCA TGAGTGTAGT TATGTAAAAC CGTTTGGAAG TGTTGAGCCA
AAGGAATTTG AGAATATCAT TTATGCAATC ATGAAGCAAG AAAGCTTTTT TAATCCTTAT
GCCATATCTT GGTCTAATGC TGTTGGTTTG ACTCAGTTTA TCCCAAAAAC AGGTTATTAT
GCAGCAAAGC AGATAGGATT AAACGATTTT GACATGGTAG ACTTATACAA GCCTGATAAT
GCTTTACTTT TTGCAAAATG GTATGTACAA AAACTTTTAA ATATGTTTAA CGGAAATTTA
GTATACGTTT TTGCATCTTA TAATTCTGGA GAGACAGCGG TTAAAAGATT TATAGATAAA
AACAATATAA AAGATGAAGC TGAATTTATA GAGCTTTATC CATACCAAGA AACAAGAGAC
TATGTTAAAA AAGTGTTAAG GAATTATGTT ATTTATAAAT ACAAGGAGTG A
|
|---|
| Protein sequence | MKKNSSLIKI MYLLMLFLFS NSYAQIDEVV KIYKSDFEQI DLDNSYDLIK KNQSFAISSY
TALKIASFLS YQQDYKITFK FIQLVDVNAF LEEDKPFYLY VYGTILKNLQ DSKYLDIFKQ
LVQNYCHSYY GYKTYLEIYP YLTEKEKYNA LDTCLKNKHY EKVKNLLFTL KDENAVNYYL
LSISQDKEFY FNQISKDSEF YLKALSKMSH LNPIYEQEYL SALLLKDDVK TFINFIKNKA
LKAFYKGDYN SFQKYYEMFY SFNDKEDSDL EWLKFLYYYK SKDLDLAKTK LLSYKKFSND
PYQIEYWSKL IENKNINEIN IKDSYKVSEF TPYLSLIVYK TGKSITIKKE NTCPNKYGEI
SEILNKLKSI DYKLAWIEGV YQVKKGKCEE VYSVLPEAGV KCFNQIHECS YVKPFGSVEP
KEFENIIYAI MKQESFFNPY AISWSNAVGL TQFIPKTGYY AAKQIGLNDF DMVDLYKPDN
ALLFAKWYVQ KLLNMFNGNL VYVFASYNSG ETAVKRFIDK NNIKDEAEFI ELYPYQETRD
YVKKVLRNYV IYKYKE
|
|---|
| |