| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_4464 |
|---|
| Symbol | |
|---|
| ID | 6309737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 4760079 |
|---|
| End bp | 4761584 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 642653144 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_001927098 |
|---|
| Protein GI | 188583653 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.414589 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCG CCGATCTTGG ACTGAGTGAC AAGGTACTCC AAGCCGTCTC CGCGGCCGGC
TACACCGAGC CGACGCCGAT CCAGGCCCAG GCGATCCCGC ACGTGCTCGC CCGGCGCGAC
GTGCTCGGCA TCGCCCAGAC CGGCACCGGC AAGACCGCCG CCTTCACCCT GCCGATGCTG
ACGATGCTGG AGACGGGCCG CGCCCGGGCC CGCATGCCGC GCACGCTGAT CCTGGAGCCG
ACGCGCGAAC TCGCCGCGCA GGTCGAGGAG AATTTCGAGC GCTACGGCAC CAACCACAAG
CTCAACGTGG CGCTGATCAT CGGCGGCGTC TCCTTCGCCG ACCAGGACGC CAAGCTGACC
CGCGGCACCG ACGTGCTGAT CGCGACCCCG GGGCGCCTGC TCGACCATTT CGAGCGCGGC
AAGCTGCTGC TGACCGGCGT CGAGCTCCTC GTCATCGACG AGGCCGACCG GATGCTCGAC
ATGGGCTTCA TCCCCGACAT CGAGCGCATC GTGAAGATGG TGCCCTTCAC GCGCCAGACG
CTGTTCTTCT CCGCCACCAT GCCGCCGGAG ATCGAGCGGC TGGCGGACAT GTTCCTGCAC
AACCCGCAGC GGGTCGAGGT GGCCCGCCCC TCCTCCACCG CCACGACCAT CGAGCAGCGT
CTCGTGGCGA CGGGCGCCGA GGGCCACGAG AAGCGCAAGA TCCTGCGCCA CCTCATCCGC
TCGGCGGACG AGCTGCAGAA CGGCATCATC TTCTGCAACC GCAAGCGCGA CGTGGCGCTG
CTGCAGAAGT CGCTGGCGAG CCACGGCTTC AACGTCGCCG CGCTGCACGG CGACATGGAC
CAGCGCGCCC GCACGGCGGC GCTCGACGGC TTCCGCAGCG GCGAGGTTCC GCTGCTCGTG
GCCTCGGACG TGGCCGCCCG CGGCCTCGAC ATCCCGGCGG TGAGCCACGT CTTCAATTTC
GACGTGCCGC ACCATCCCGA GGACTACGTC CACCGGATCG GCCGCACCGG GCGCGCCGGG
CGCGCCGGCC ACGCCTTCAC CCTGGCGAGC CGCGCCGACG AGCGCTCGCT CGCGGCGATC
GAGAGCCTGA TCGGCCGGCC GATCGAGTGG CTCGACGGCG ACCTTTCCAC CGTGACCGAC
GACACCGAGG GCGACGAGCC GCGCCGCCGC CGCGGCACCC GCCGGGCCAG GGGAAGCGAG
AAGGGGAGCG AGCGGGGCGC CGAGAAGGCC GCCGAGCGGA CGGCCGAGCG GCCGAGCGAG
AGCCGCTCAC GCGGCGGCCG GCGCCCGGCC TCCGGCCGCA GCCGCGGCGA GGAGAGCGGA
CGCGAACCGA TCCGCGAGGC GGAGCCGGTC TCCCCGGCCC GCGAGCCCGC CCGAAGCGCT
CCCGACCGCG CCCGCTCCGA GCGCCGCCCC CCGCGCCGCG ACGAGGACGA CGACACGCCG
GTGGGCCTCG GCTCGCACGT GCCGGCCTTC CTTCTGAAGC CGACCGGGTT CGGGAAGAGC
AAGTAG
|
|---|
| Protein sequence | MSFADLGLSD KVLQAVSAAG YTEPTPIQAQ AIPHVLARRD VLGIAQTGTG KTAAFTLPML
TMLETGRARA RMPRTLILEP TRELAAQVEE NFERYGTNHK LNVALIIGGV SFADQDAKLT
RGTDVLIATP GRLLDHFERG KLLLTGVELL VIDEADRMLD MGFIPDIERI VKMVPFTRQT
LFFSATMPPE IERLADMFLH NPQRVEVARP SSTATTIEQR LVATGAEGHE KRKILRHLIR
SADELQNGII FCNRKRDVAL LQKSLASHGF NVAALHGDMD QRARTAALDG FRSGEVPLLV
ASDVAARGLD IPAVSHVFNF DVPHHPEDYV HRIGRTGRAG RAGHAFTLAS RADERSLAAI
ESLIGRPIEW LDGDLSTVTD DTEGDEPRRR RGTRRARGSE KGSERGAEKA AERTAERPSE
SRSRGGRRPA SGRSRGEESG REPIREAEPV SPAREPARSA PDRARSERRP PRRDEDDDTP
VGLGSHVPAF LLKPTGFGKS K
|
|---|
| |