| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_3685 |
|---|
| Symbol | |
|---|
| ID | 6311962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | + |
|---|
| Start bp | 3928206 |
|---|
| End bp | 3929402 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642652406 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001926367 |
|---|
| Protein GI | 188582922 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.186863 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC CGCGGAGTCT TATTGCATGC GTGCTCATGA TCGCGCTCTC GGCCTGCAAT
CAGAAGCAGG CCGTAGCCCC GTTGCCGGCC GGCTTGCCGG AGGTAAGCAT CGTCACTGTT
CGGGCGCAGC CGGTCCCATA CGTGAGAAGC CTTCCCGGCC GGGTCGCTCC GCTTCGGGTC
GCGGAGGTGC GCTCCCGAGT TTCCGGACTC ATAATCAAGC GTCTGTTCGA GCAAGGCAGC
CACGTCAAGG AAGGCGACAT CCTCTACAAA ATCGATCCGG CTCCCTACGA GGTCGAGCTC
GCGCGAAGCG AGGCGGAACT GGCCAAAGCC GAGGCAGCCC TCACCCTCGC GACACAGCAG
GCGGACCGCC TTGGGCTTCT TCTCGCGCGA GGTACCGCGA GCCAAGCGCA GTATGATGGT
GCCTCCGCGG CACAGAAGCA GGCTCAGGCG GAAGTCGCAG CGGCGAAGGC CATGCGCGAT
AGGGCCAAGT TGAACCTCGG CTACACCGAC GTACGCGCTC CCATCTCGGG TCGTATTGGG
CGAGCGCTGC TCACGGAGGG TAATCTCATC GAGCAAGGCA GCGGGCAGGT GTTCGCCACC
ATCCAGCAGC TCGATCCGAT CTACGTCGAC ATCACTCAGT CGGTCGGTGA ACTGAACAAG
ATCCGGCGCG ACCTTGCGAG AGGCGAGCTA CTAAGCCTTG CGAACGATGT CGCCAATGTC
GAGCTCATCT TGGACGATGG AACGGTCTAT GGCCAAACCG GCAAACTCCT ATTCTCCGAT
GTGACGGCCG ATCCGAGCAC CGGCCAAGTC ACCATGCGCG TGCTGTTCCC CAATCCCCGG
GACGAGCTGT TCCCTGGCAT GTACGTGCGG GCGCGCCTTC CGCAGGGCAT CGACGCGGAC
GCCATCGTCG TTCCTCAGCA GGCGGTGCAC CGCACCAGCG ACGGCAAGCC TGAGGTTTGG
GTCGTCCGCG ACGGTGATAA GGTCATCCTC CATCCAGTGG AGGTCGGGCC GGTAACCGAC
GAGGGGTGGA TCGTCCGCGA AGGCCTCAAG TCAGGCGACC GCGTCGTCGT CGAGGGATTC
CAGAAAATCA GTCCAGGAAC ACAGGTGAGA CCCGTGGAAT GGAAGCTCGT CCTCCCCGGC
GGAACCGAGT TTGTTCCGCC TGAGAGTACC CTCTCTGAGA CAGCGCTGCA GTATTGA
|
|---|
| Protein sequence | MIKPRSLIAC VLMIALSACN QKQAVAPLPA GLPEVSIVTV RAQPVPYVRS LPGRVAPLRV
AEVRSRVSGL IIKRLFEQGS HVKEGDILYK IDPAPYEVEL ARSEAELAKA EAALTLATQQ
ADRLGLLLAR GTASQAQYDG ASAAQKQAQA EVAAAKAMRD RAKLNLGYTD VRAPISGRIG
RALLTEGNLI EQGSGQVFAT IQQLDPIYVD ITQSVGELNK IRRDLARGEL LSLANDVANV
ELILDDGTVY GQTGKLLFSD VTADPSTGQV TMRVLFPNPR DELFPGMYVR ARLPQGIDAD
AIVVPQQAVH RTSDGKPEVW VVRDGDKVIL HPVEVGPVTD EGWIVREGLK SGDRVVVEGF
QKISPGTQVR PVEWKLVLPG GTEFVPPEST LSETALQY
|
|---|
| |